Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1857059..1857205 | Replicon | chromosome |
| Accession | NZ_CP099260 | ||
| Organism | Klebsiella aerogenes strain RHB08-SO-C04 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1857094..1857197 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1857059..1857205 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| NFJ54_RS08955 (NFJ54_08955) | 1852167..1854227 | + | 2061 | WP_032705952.1 | oligopeptidase B | - |
| NFJ54_RS08960 (NFJ54_08960) | 1854230..1854889 | - | 660 | WP_015366006.1 | exodeoxyribonuclease X | - |
| NFJ54_RS08965 (NFJ54_08965) | 1854969..1855199 | - | 231 | WP_015366007.1 | DNA polymerase III subunit theta | - |
| NFJ54_RS08970 (NFJ54_08970) | 1855334..1855708 | + | 375 | WP_042893410.1 | CopC domain-containing protein YobA | - |
| NFJ54_RS08975 (NFJ54_08975) | 1855712..1856581 | + | 870 | WP_042893412.1 | copper homeostasis membrane protein CopD | - |
| NFJ54_RS08980 (NFJ54_08980) | 1856595..1856936 | + | 342 | WP_125992486.1 | YebY family protein | - |
| - | 1857059..1857205 | - | 147 | - | - | Antitoxin |
| - | 1857094..1857197 | + | 104 | - | - | Toxin |
| NFJ54_RS08985 (NFJ54_08985) | 1857325..1858272 | - | 948 | WP_032709999.1 | spore coat U domain-containing protein | - |
| NFJ54_RS08990 (NFJ54_08990) | 1858291..1860615 | - | 2325 | WP_045360584.1 | fimbria/pilus outer membrane usher protein | - |
| NFJ54_RS08995 (NFJ54_08995) | 1860618..1861367 | - | 750 | WP_015366013.1 | molecular chaperone | - |
| NFJ54_RS09000 (NFJ54_09000) | 1861385..1861903 | - | 519 | WP_015366014.1 | spore coat U domain-containing protein | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T248291 NZ_CP099260:1857094-1857197 [Klebsiella aerogenes]
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 147 bp
>AT248291 NZ_CP099260:c1857205-1857059 [Klebsiella aerogenes]
TAATAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAA
GTTGGCATTAATGCAGGCTAAGTCGCCTTGCCTTATAAGAATAGTTGACTGTGACAGGTTTTCCAGT
TAATAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAA
GTTGGCATTAATGCAGGCTAAGTCGCCTTGCCTTATAAGAATAGTTGACTGTGACAGGTTTTCCAGT
