Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2103132..2103275 | Replicon | chromosome |
| Accession | NZ_CP099037 | ||
| Organism | Citrobacter freundii strain RHB44-SO-C05 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2103167..2103270 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2103132..2103275 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| NFL15_RS10155 | 2099579..2100241 | - | 663 | WP_003841659.1 | exodeoxyribonuclease X | - |
| NFL15_RS10160 | 2100265..2100921 | - | 657 | WP_003841657.1 | carbon-nitrogen hydrolase family protein | - |
| NFL15_RS10165 | 2101028..2101258 | - | 231 | WP_003034925.1 | DNA polymerase III subunit theta | - |
| NFL15_RS10170 | 2101402..2101776 | + | 375 | WP_003034928.1 | CopC domain-containing protein YobA | - |
| NFL15_RS10175 | 2101780..2102652 | + | 873 | WP_049002332.1 | copper homeostasis membrane protein CopD | - |
| NFL15_RS10180 | 2102673..2103011 | + | 339 | WP_003034934.1 | YebY family protein | - |
| - | 2103132..2103275 | - | 144 | - | - | Antitoxin |
| - | 2103167..2103270 | + | 104 | - | - | Toxin |
| NFL15_RS10185 | 2103424..2104065 | + | 642 | WP_202581198.1 | protein-serine/threonine phosphatase | - |
| NFL15_RS10190 | 2104066..2104257 | - | 192 | WP_003034941.1 | YebW family protein | - |
| NFL15_RS10195 | 2104360..2104596 | - | 237 | WP_029139506.1 | YebV family protein | - |
| NFL15_RS10200 | 2104697..2106085 | - | 1389 | WP_202581325.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T248177 NZ_CP099037:2103167-2103270 [Citrobacter freundii]
GGCAGGGTAACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAGGGTAACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 144 bp
>AT248177 NZ_CP099037:c2103275-2103132 [Citrobacter freundii]
CACATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTAAGTTACCCTGCCATTTAAGAATAGATGACAGCGCCAGGTTTTCCAGT
CACATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTAAGTTACCCTGCCATTTAAGAATAGATGACAGCGCCAGGTTTTCCAGT
