Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2274516..2274662 | Replicon | chromosome |
| Accession | NZ_CP098719 | ||
| Organism | Yersinia ruckeri strain NVI-11267 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2274520..2274613 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2274516..2274662 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ND445_RS10415 (ND445_10410) | 2269746..2270885 | + | 1140 | WP_096823472.1 | hypothetical protein | - |
| ND445_RS10420 (ND445_10415) | 2270882..2271310 | + | 429 | WP_096823473.1 | hypothetical protein | - |
| ND445_RS10425 (ND445_10420) | 2271375..2272211 | + | 837 | WP_202976849.1 | hypothetical protein | - |
| ND445_RS10430 (ND445_10425) | 2272355..2272528 | + | 174 | WP_170854680.1 | hypothetical protein | - |
| ND445_RS10435 (ND445_10430) | 2272719..2272973 | + | 255 | WP_193553624.1 | hypothetical protein | - |
| ND445_RS10440 (ND445_10435) | 2273090..2273359 | + | 270 | WP_096823474.1 | excisionase | - |
| ND445_RS10445 (ND445_10440) | 2273334..2274443 | + | 1110 | WP_162486764.1 | tyrosine-type recombinase/integrase | - |
| - | 2274516..2274662 | + | 147 | - | - | Antitoxin |
| - | 2274520..2274613 | - | 94 | - | - | Toxin |
| ND445_RS10450 (ND445_10445) | 2274772..2275113 | - | 342 | WP_004721721.1 | YebY family protein | - |
| ND445_RS10455 (ND445_10450) | 2275208..2276092 | - | 885 | WP_004721723.1 | copper homeostasis membrane protein CopD | - |
| ND445_RS10460 (ND445_10455) | 2276094..2276480 | - | 387 | WP_038243346.1 | CopC domain-containing protein YobA | - |
| ND445_RS10465 (ND445_10460) | 2276885..2277400 | - | 516 | WP_004721727.1 | non-heme ferritin | - |
| ND445_RS10470 (ND445_10465) | 2277803..2278033 | + | 231 | WP_038243344.1 | DNA polymerase III subunit theta | - |
| ND445_RS10475 (ND445_10470) | 2278156..2279106 | - | 951 | WP_004721733.1 | prolyl aminopeptidase | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | - | 2216594..2278033 | 61439 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 94 bp
>T247888 NZ_CP098719:c2274613-2274520 [Yersinia ruckeri]
TAAGCCTGCATGAAATGCCAACTTTTAGCGCACGGCTCTATCCCAAGAGCCATTTCCCTGGACCGAATATAGGATTCGTA
TTCGGTCTTTTTTT
TAAGCCTGCATGAAATGCCAACTTTTAGCGCACGGCTCTATCCCAAGAGCCATTTCCCTGGACCGAATATAGGATTCGTA
TTCGGTCTTTTTTT
Antitoxin
Download Length: 147 bp
>AT247888 NZ_CP098719:2274516-2274662 [Yersinia ruckeri]
AGATAAAAAAAGACCGAATACGAATCCTATATTCGGTCCAGGGAAATGGCTCTTGGGATAGAGCCGTGCGCTAAAAGTTG
GCATTTCATGCAGGCTTATTAAGCCGTACCACTTAAGCGTAGTAGACGACCCACATTTTACCAATTT
AGATAAAAAAAGACCGAATACGAATCCTATATTCGGTCCAGGGAAATGGCTCTTGGGATAGAGCCGTGCGCTAAAAGTTG
GCATTTCATGCAGGCTTATTAAGCCGTACCACTTAAGCGTAGTAGACGACCCACATTTTACCAATTT
