Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1477528..1477671 | Replicon | chromosome |
| Accession | NC_014121 | ||
| Organism | Enterobacter cloacae subsp. cloacae ATCC 13047 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1477563..1477666 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1477528..1477671 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ECL_RS07150 | 1474012..1474674 | - | 663 | WP_013096100.1 | exodeoxyribonuclease X | - |
| ECL_RS07155 | 1474698..1475348 | - | 651 | WP_013096101.1 | carbon-nitrogen hydrolase family protein | - |
| ECL_RS07160 | 1475458..1475688 | - | 231 | WP_013096102.1 | DNA polymerase III subunit theta | - |
| ECL_RS07165 | 1475826..1476197 | + | 372 | WP_013096103.1 | CopC domain-containing protein YobA | - |
| ECL_RS07170 | 1476199..1477068 | + | 870 | WP_013096104.1 | copper homeostasis membrane protein CopD | - |
| ECL_RS07175 | 1477085..1477423 | + | 339 | WP_013096105.1 | YebY family protein | - |
| - | 1477528..1477671 | - | 144 | - | - | Antitoxin |
| - | 1477563..1477666 | + | 104 | - | - | Toxin |
| ECL_RS07180 | 1478848..1479695 | - | 848 | Protein_1405 | benzoate transporter | - |
| ECL_RS07185 | 1480485..1481426 | - | 942 | WP_013096111.1 | VirK/YbjX family protein | - |
| ECL_RS07190 | 1481593..1482237 | + | 645 | WP_013096112.1 | protein-serine/threonine phosphatase | - |
| ECL_RS07195 | 1482271..1482510 | - | 240 | WP_013096113.1 | YebV family protein | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T24742 NC_014121:1477563-1477666 [Enterobacter cloacae subsp. cloacae ATCC 13047]
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 144 bp
>AT24742 NC_014121:c1477671-1477528 [Enterobacter cloacae subsp. cloacae ATCC 13047]
CAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTAAGTCGCCTTGCCTTTTAAGAATAGATGACGACGCCAGGTTTTCCAGT
CAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTAAGTCGCCTTGCCTTTTAAGAATAGATGACGACGCCAGGTTTTCCAGT
