Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2029242..2029513 | Replicon | chromosome |
| Accession | NZ_CP098231 | ||
| Organism | Escherichia coli strain XJ34 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2029372..2029475 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2029242..2029513 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| KFZ60_RS09710 | 2025797..2026459 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| KFZ60_RS09715 | 2026483..2027139 | - | 657 | WP_088376165.1 | carbon-nitrogen hydrolase family protein YobB | - |
| KFZ60_RS09720 | 2027241..2027471 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| KFZ60_RS09725 | 2027610..2027984 | + | 375 | WP_000168738.1 | CopC domain-containing protein YobA | - |
| KFZ60_RS09730 | 2027988..2028860 | + | 873 | WP_097756045.1 | copper homeostasis membrane protein CopD | - |
| KFZ60_RS09735 | 2028873..2029214 | + | 342 | WP_000976472.1 | YebY family protein | - |
| - | 2029242..2029513 | - | 272 | - | - | Antitoxin |
| - | 2029372..2029475 | + | 104 | - | - | Toxin |
| KFZ60_RS09740 | 2029610..2030266 | + | 657 | WP_000812739.1 | protein-serine/threonine phosphatase | - |
| KFZ60_RS09745 | 2030267..2030458 | - | 192 | WP_001313035.1 | YebW family protein | - |
| KFZ60_RS09750 | 2030563..2030799 | - | 237 | WP_001295499.1 | YebV family protein | - |
| KFZ60_RS09755 | 2030917..2032356 | - | 1440 | WP_088376320.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T247296 NZ_CP098231:2029372-2029475 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT247296 NZ_CP098231:c2029513-2029242 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
