Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2876408..2876679 | Replicon | chromosome |
| Accession | NZ_CP098217 | ||
| Organism | Escherichia coli strain Z0117EC0032 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2876446..2876549 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2876408..2876679 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| NBY14_RS13655 | 2873565..2875004 | + | 1440 | WP_024186439.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| NBY14_RS13660 | 2875122..2875358 | + | 237 | WP_001295499.1 | YebV family protein | - |
| NBY14_RS13665 | 2875463..2875654 | + | 192 | WP_001296140.1 | YebW family protein | - |
| NBY14_RS13670 | 2875655..2876311 | - | 657 | WP_001551231.1 | protein-serine/threonine phosphatase | - |
| - | 2876408..2876679 | + | 272 | - | - | Antitoxin |
| - | 2876446..2876549 | - | 104 | - | - | Toxin |
| NBY14_RS13675 | 2876707..2877048 | - | 342 | WP_000976472.1 | YebY family protein | - |
| NBY14_RS13680 | 2877061..2877933 | - | 873 | WP_001551232.1 | copper homeostasis membrane protein CopD | - |
| NBY14_RS13685 | 2877937..2878311 | - | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| NBY14_RS13690 | 2878450..2878680 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| NBY14_RS13695 | 2878782..2879438 | + | 657 | WP_000011653.1 | carbon-nitrogen hydrolase family protein YobB | - |
| NBY14_RS13700 | 2879462..2880124 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | - | 2873559..2883989 | 10430 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T247166 NZ_CP098217:c2876549-2876446 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT247166 NZ_CP098217:2876408-2876679 [Escherichia coli]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGCCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGCCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
