Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2012882..2013027 | Replicon | chromosome |
| Accession | NZ_CP098159 | ||
| Organism | Klebsiella pneumoniae strain Z0117KP0008 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2012918..2013020 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2012882..2013027 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| NBY40_RS09655 | 2008012..2010072 | + | 2061 | WP_004148850.1 | oligopeptidase B | - |
| NBY40_RS09660 | 2010076..2010735 | - | 660 | WP_032435029.1 | exodeoxyribonuclease X | - |
| NBY40_RS09665 | 2010814..2011044 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| NBY40_RS09670 | 2011157..2011531 | + | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| NBY40_RS09675 | 2011535..2012404 | + | 870 | WP_032435031.1 | copper homeostasis membrane protein CopD | - |
| NBY40_RS09680 | 2012421..2012759 | + | 339 | WP_002911404.1 | YebY family protein | - |
| - | 2012882..2013027 | - | 146 | - | - | Antitoxin |
| - | 2012918..2013020 | + | 103 | - | - | Toxin |
| NBY40_RS09685 | 2013395..2013538 | - | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| NBY40_RS09690 | 2013643..2014611 | - | 969 | WP_004151446.1 | VirK/YbjX family protein | - |
| NBY40_RS09695 | 2014768..2015421 | + | 654 | WP_004891053.1 | protein-serine/threonine phosphatase | - |
| NBY40_RS09700 | 2015418..2015609 | - | 192 | WP_002911395.1 | YebW family protein | - |
| NBY40_RS09705 | 2015707..2015946 | - | 240 | WP_002911393.1 | YebV family protein | - |
| NBY40_RS09710 | 2016062..2017495 | - | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T246728 NZ_CP098159:2012918-2013020 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT246728 NZ_CP098159:c2013027-2012882 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
