Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1976985..1977130 | Replicon | chromosome |
| Accession | NZ_CP097703 | ||
| Organism | Klebsiella pneumoniae strain IR12197_1 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1977021..1977123 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1976985..1977130 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| M3X87_RS09645 (M3X87_09645) | 1972115..1974175 | + | 2061 | WP_004151449.1 | oligopeptidase B | - |
| M3X87_RS09650 (M3X87_09650) | 1974179..1974838 | - | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| M3X87_RS09655 (M3X87_09655) | 1974917..1975147 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| M3X87_RS09660 (M3X87_09660) | 1975260..1975634 | + | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| M3X87_RS09665 (M3X87_09665) | 1975638..1976507 | + | 870 | WP_062955019.1 | copper homeostasis membrane protein CopD | - |
| M3X87_RS09670 (M3X87_09670) | 1976524..1976862 | + | 339 | WP_002911404.1 | YebY family protein | - |
| - | 1976985..1977130 | - | 146 | - | - | Antitoxin |
| - | 1977021..1977123 | + | 103 | - | - | Toxin |
| M3X87_RS09675 (M3X87_09675) | 1977498..1977641 | - | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| M3X87_RS09680 (M3X87_09680) | 1977746..1978714 | - | 969 | WP_004151446.1 | VirK/YbjX family protein | - |
| M3X87_RS09685 (M3X87_09685) | 1978871..1979523 | + | 653 | Protein_1894 | protein-serine/threonine phosphatase | - |
| M3X87_RS09690 (M3X87_09690) | 1979520..1979711 | - | 192 | WP_002911395.1 | YebW family protein | - |
| M3X87_RS09695 (M3X87_09695) | 1979809..1980048 | - | 240 | WP_002911393.1 | YebV family protein | - |
| M3X87_RS09700 (M3X87_09700) | 1980164..1981597 | - | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | - | 1972148..1990199 | 18051 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T246022 NZ_CP097703:1977021-1977123 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT246022 NZ_CP097703:c1977130-1976985 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
