Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) vapBC/PIN(toxin)
Location 1978888..1979533 Replicon chromosome
Accession NZ_CP097127
Organism Conexibacter sp. S30A1

Toxin (Protein)


Gene name vapC Uniprot ID -
Locus tag M3M54_RS09740 Protein ID WP_249018850.1
Coordinates 1978888..1979304 (-) Length 139 a.a.

Antitoxin (Protein)


Gene name vapB Uniprot ID -
Locus tag M3M54_RS09745 Protein ID WP_249018851.1
Coordinates 1979312..1979533 (-) Length 74 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
M3M54_RS09720 1974298..1975143 - 846 WP_249018846.1 dTDP-4-dehydrorhamnose reductase -
M3M54_RS09725 1975265..1976881 + 1617 WP_249018847.1 circularly permuted type 2 ATP-grasp protein -
M3M54_RS09730 1976882..1977934 + 1053 WP_249018848.1 alpha-E domain-containing protein -
M3M54_RS09735 1977947..1978849 + 903 WP_249018849.1 transglutaminase family protein -
M3M54_RS09740 1978888..1979304 - 417 WP_249018850.1 PIN domain-containing protein Toxin
M3M54_RS09745 1979312..1979533 - 222 WP_249018851.1 antitoxin Antitoxin
M3M54_RS09750 1979618..1980496 - 879 WP_249018852.1 oxidoreductase -
M3M54_RS09755 1980649..1981482 + 834 WP_249018853.1 lysophospholipid acyltransferase family protein -
M3M54_RS09760 1981506..1982513 - 1008 WP_249018854.1 ABC transporter permease -
M3M54_RS09765 1982510..1984051 - 1542 WP_249018855.1 sugar ABC transporter ATP-binding protein -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

PIN domain toxin

(3-135)

Antitoxin


No domain identified.



Sequences

Toxin        


Download         Length: 139 a.a.        Molecular weight: 14637.65 Da        Isoelectric Point: 6.8384

>T244810 WP_249018850.1 NZ_CP097127:c1979304-1978888 [Conexibacter sp. S30A1]
VGLLDVNALVALAWDSHVHHASVRSWMRSSGRAGWATCPVTESGFVRVSSNPKVLPSPIGVAAARAVLVALRAAEGHRFL
GDEVSECDPDVPEVHGYRQVTDAHLLTLARRHGVRLVTFDSGIAALAQGGDVELLTTI

Download         Length: 417 bp

Antitoxin


Download         Length: 74 a.a.        Molecular weight: 7841.94 Da        Isoelectric Point: 4.5258

>AT244810 WP_249018851.1 NZ_CP097127:c1979533-1979312 [Conexibacter sp. S30A1]
MRTTLDIDDDVVTAARELAAIEKRSLGTVISRLARRGLTPAAVDSDEGLPVIRVPAGTPPITSEMVRRALDED

Download         Length: 222 bp


Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure

Antitoxin

Source ID Structure

References