Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2779859..2780007 | Replicon | chromosome |
| Accession | NZ_CP096905 | ||
| Organism | Citrobacter amalonaticus strain RSHH22 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2779864..2779967 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2779859..2780007 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| M2R49_RS13285 (M2R49_13270) | 2776967..2778406 | + | 1440 | WP_082366170.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| M2R49_RS13290 (M2R49_13275) | 2778521..2778757 | + | 237 | WP_161215572.1 | YebV family protein | - |
| M2R49_RS13295 (M2R49_13280) | 2778859..2779050 | + | 192 | WP_043000391.1 | YebW family protein | - |
| M2R49_RS13300 (M2R49_13285) | 2779051..2779713 | - | 663 | WP_043000390.1 | protein-serine/threonine phosphatase | - |
| - | 2779859..2780007 | + | 149 | - | - | Antitoxin |
| - | 2779864..2779967 | - | 104 | - | - | Toxin |
| M2R49_RS13305 (M2R49_13290) | 2780123..2780461 | - | 339 | WP_043000379.1 | YebY family protein | - |
| M2R49_RS13310 (M2R49_13295) | 2780478..2781350 | - | 873 | WP_054176289.1 | copper homeostasis membrane protein CopD | - |
| M2R49_RS13315 (M2R49_13300) | 2781353..2781727 | - | 375 | WP_044326804.1 | CopC domain-containing protein YobA | - |
| M2R49_RS13320 (M2R49_13305) | 2781865..2782095 | + | 231 | WP_042318454.1 | DNA polymerase III subunit theta | - |
| M2R49_RS13325 (M2R49_13310) | 2782204..2782866 | + | 663 | WP_054176290.1 | carbon-nitrogen hydrolase family protein | - |
| M2R49_RS13330 (M2R49_13315) | 2782890..2783552 | + | 663 | WP_043000375.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T244131 NZ_CP096905:c2779967-2779864 [Citrobacter amalonaticus]
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 149 bp
>AT244131 NZ_CP096905:2779859-2780007 [Citrobacter amalonaticus]
CAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTAAGTCGCCTTGCCTTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTCTGCG
CAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTAAGTCGCCTTGCCTTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTCTGCG
