Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 51992..52263 | Replicon | chromosome |
| Accession | NZ_CP096834 | ||
| Organism | Escherichia coli strain PM4-5 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 52122..52225 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 51992..52263 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| MYF75_RS01900 | 48547..49209 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| MYF75_RS01905 | 49233..49889 | - | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein YobB | - |
| MYF75_RS01910 | 49991..50221 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| MYF75_RS01915 | 50360..50734 | + | 375 | WP_000204700.1 | CopC domain-containing protein YobA | - |
| MYF75_RS01920 | 50738..51610 | + | 873 | WP_000879280.1 | copper homeostasis membrane protein CopD | - |
| MYF75_RS01925 | 51623..51964 | + | 342 | WP_000976472.1 | YebY family protein | - |
| - | 51992..52263 | - | 272 | - | - | Antitoxin |
| - | 52122..52225 | + | 104 | - | - | Toxin |
| MYF75_RS01930 | 52360..53016 | + | 657 | WP_000812712.1 | protein-serine/threonine phosphatase | - |
| MYF75_RS01935 | 53017..53208 | - | 192 | WP_001296140.1 | YebW family protein | - |
| MYF75_RS01940 | 53313..53549 | - | 237 | WP_001295499.1 | YebV family protein | - |
| MYF75_RS01945 | 53667..55106 | - | 1440 | WP_000057022.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | - | 1..68102 | 68101 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T243437 NZ_CP096834:52122-52225 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT243437 NZ_CP096834:c52263-51992 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
