Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 452214..452359 | Replicon | chromosome |
| Accession | NZ_CP096810 | ||
| Organism | Klebsiella pneumoniae strain Bio19 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 452250..452352 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 452214..452359 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| MOV22_RS02075 | 447344..449404 | + | 2061 | WP_004151449.1 | oligopeptidase B | - |
| MOV22_RS02080 | 449408..450067 | - | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| MOV22_RS02085 | 450146..450376 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| MOV22_RS02090 | 450489..450863 | + | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| MOV22_RS02095 | 450867..451736 | + | 870 | WP_087775916.1 | copper homeostasis membrane protein CopD | - |
| MOV22_RS02100 | 451753..452091 | + | 339 | WP_002911404.1 | YebY family protein | - |
| - | 452214..452359 | - | 146 | - | - | Antitoxin |
| - | 452250..452352 | + | 103 | - | - | Toxin |
| MOV22_RS02105 | 452727..452870 | - | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| MOV22_RS02110 | 452975..453943 | - | 969 | WP_014907334.1 | VirK/YbjX family protein | - |
| MOV22_RS02115 | 454100..454753 | + | 654 | WP_004175436.1 | protein-serine/threonine phosphatase | - |
| MOV22_RS02120 | 454750..454941 | - | 192 | WP_002911395.1 | YebW family protein | - |
| MOV22_RS02125 | 455039..455278 | - | 240 | WP_002911393.1 | YebV family protein | - |
| MOV22_RS02130 | 455394..456827 | - | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T243351 NZ_CP096810:452250-452352 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT243351 NZ_CP096810:c452359-452214 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
