Detailed information of TA system
Overview
TA module
| Type | IV | Classification (family/domain) | yeeUV (cbtA-cbeA)/CbtA-CbeA |
| Location | 703367..704202 | Replicon | chromosome |
| Accession | NZ_CP096118 | ||
| Organism | Salmonella enterica subsp. enterica serovar Indiana strain 22 | ||
Toxin (Protein)
| Gene name | yeeV | Uniprot ID | A0A763DSF8 |
| Locus tag | MZK41_RS03430 | Protein ID | WP_047928871.1 |
| Coordinates | 703825..704202 (+) | Length | 126 a.a. |
Antitoxin (Protein)
| Gene name | yeeU | Uniprot ID | - |
| Locus tag | MZK41_RS03425 | Protein ID | WP_047928872.1 |
| Coordinates | 703367..703735 (+) | Length | 123 a.a. |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| MZK41_RS03400 (700483) | 700483..701301 | + | 819 | WP_001234702.1 | DUF932 domain-containing protein | - |
| MZK41_RS03405 (701392) | 701392..701877 | + | 486 | WP_000214316.1 | antirestriction protein | - |
| MZK41_RS03410 (701892) | 701892..702368 | + | 477 | WP_148251817.1 | RadC family protein | - |
| MZK41_RS03415 (702437) | 702437..702658 | + | 222 | WP_000692353.1 | DUF987 domain-containing protein | - |
| MZK41_RS03420 (702673) | 702673..703317 | + | 645 | WP_101975700.1 | antitoxin of toxin-antitoxin stability system | - |
| MZK41_RS03425 (703367) | 703367..703735 | + | 369 | WP_047928872.1 | type IV toxin-antitoxin system YeeU family antitoxin | Antitoxin |
| MZK41_RS03430 (703825) | 703825..704202 | + | 378 | WP_047928871.1 | TA system toxin CbtA family protein | Toxin |
| MZK41_RS03435 (704199) | 704199..704348 | + | 150 | Protein_673 | DUF5983 family protein | - |
| MZK41_RS03440 (704424) | 704424..704621 | + | 198 | WP_096093965.1 | DUF957 domain-containing protein | - |
| MZK41_RS03445 (704706) | 704706..705551 | + | 846 | WP_072650597.1 | DUF4942 domain-containing protein | - |
| MZK41_RS03450 (705553) | 705553..705810 | - | 258 | WP_248114753.1 | hypothetical protein | - |
| MZK41_RS03455 (705810) | 705810..706823 | - | 1014 | WP_015386347.1 | tyrosine-type recombinase/integrase | - |
| MZK41_RS03460 (707050) | 707050..707664 | - | 615 | WP_015386349.1 | phage repressor protein CI | - |
| MZK41_RS03465 (707766) | 707766..708002 | + | 237 | WP_015386350.1 | hypothetical protein | - |
| MZK41_RS03470 (708037) | 708037..708546 | + | 510 | WP_015386351.1 | phage regulatory CII family protein | - |
| MZK41_RS03475 (708554) | 708554..708754 | + | 201 | WP_015386352.1 | DUF2724 domain-containing protein | - |
| MZK41_RS03480 (708718) | 708718..709059 | + | 342 | WP_000963477.1 | DUF5347 domain-containing protein | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | rfaE | 701392..752471 | 51079 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 126 a.a. Molecular weight: 13941.88 Da Isoelectric Point: 7.3222
>T242747 WP_047928871.1 NZ_CP096118:703825-704202 [Salmonella enterica subsp. enterica serovar Indiana]
MKTLPVLPGQAAGSRPSPVEIWQTLLTRLLDQHYGLTLNDTPFADERVIEQHIEAGISLCDAVNFLVEKYALVRTDQPGF
STCTHSQLINSIDILRARRATGLMTRDNYRTVNGITQGKHPEAKQ
MKTLPVLPGQAAGSRPSPVEIWQTLLTRLLDQHYGLTLNDTPFADERVIEQHIEAGISLCDAVNFLVEKYALVRTDQPGF
STCTHSQLINSIDILRARRATGLMTRDNYRTVNGITQGKHPEAKQ
Download Length: 378 bp
>T242747 NZ_OW967178:2092737-2092840 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 123 a.a. Molecular weight: 13757.47 Da Isoelectric Point: 5.0907
>AT242747 WP_047928872.1 NZ_CP096118:703367-703735 [Salmonella enterica subsp. enterica serovar Indiana]
VSDTLHETNYPDDNNDRPWWGLPCTVTPCFGARLVQEDNQLHYLADRAGIRGRFSDADAYHLDQALPLLMKQLELMLTSG
ELNPRHQHTVTLYAKGLTCEADTLGSCGYVYMAVYPTPETKK
VSDTLHETNYPDDNNDRPWWGLPCTVTPCFGARLVQEDNQLHYLADRAGIRGRFSDADAYHLDQALPLLMKQLELMLTSG
ELNPRHQHTVTLYAKGLTCEADTLGSCGYVYMAVYPTPETKK
Download Length: 369 bp
>AT242747 NZ_OW967178:c2092878-2092607 [Escherichia coli]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
Similar Proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|