Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1907954..1908099 | Replicon | chromosome |
| Accession | NZ_CP095762 | ||
| Organism | Klebsiella pneumoniae strain KP5362 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1907990..1908092 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1907954..1908099 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| MYA94_RS09250 | 1903084..1905144 | + | 2061 | WP_004151449.1 | oligopeptidase B | - |
| MYA94_RS09255 | 1905148..1905807 | - | 660 | WP_247722306.1 | exodeoxyribonuclease X | - |
| MYA94_RS09260 | 1905886..1906116 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| MYA94_RS09265 | 1906229..1906603 | + | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| MYA94_RS09270 | 1906607..1907476 | + | 870 | WP_004189267.1 | copper homeostasis membrane protein CopD | - |
| MYA94_RS09275 | 1907493..1907831 | + | 339 | WP_002911404.1 | YebY family protein | - |
| - | 1907954..1908099 | - | 146 | - | - | Antitoxin |
| - | 1907990..1908092 | + | 103 | - | - | Toxin |
| MYA94_RS09280 | 1908467..1908610 | - | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| MYA94_RS09285 | 1908715..1909683 | - | 969 | WP_004151446.1 | VirK/YbjX family protein | - |
| MYA94_RS09290 | 1909840..1910493 | + | 654 | WP_004180432.1 | protein-serine/threonine phosphatase | - |
| MYA94_RS09295 | 1910490..1910681 | - | 192 | WP_002911395.1 | YebW family protein | - |
| MYA94_RS09300 | 1910779..1911018 | - | 240 | WP_002911393.1 | YebV family protein | - |
| MYA94_RS09305 | 1911134..1912567 | - | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T242481 NZ_CP095762:1907990-1908092 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT242481 NZ_CP095762:c1908099-1907954 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
