Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 4558524..4558792 | Replicon | chromosome |
| Accession | NZ_CP095518 | ||
| Organism | Escherichia coli strain GN02350 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 4558652..4558754 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 4558524..4558792 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| MW405_RS21515 | 4555078..4555740 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| MW405_RS21520 | 4555763..4556419 | - | 657 | WP_000011664.1 | carbon-nitrogen hydrolase family protein YobB | - |
| MW405_RS21525 | 4556521..4556751 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| MW405_RS21530 | 4556890..4557264 | + | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| MW405_RS21535 | 4557268..4558140 | + | 873 | WP_000879310.1 | copper homeostasis membrane protein CopD | - |
| MW405_RS21540 | 4558153..4558494 | + | 342 | WP_000977376.1 | YebY family protein | - |
| - | 4558524..4558792 | - | 269 | - | - | Antitoxin |
| - | 4558652..4558754 | + | 103 | - | - | Toxin |
| MW405_RS21545 | 4558889..4559545 | + | 657 | WP_000812743.1 | protein-serine/threonine phosphatase | - |
| MW405_RS21550 | 4559546..4559737 | - | 192 | WP_001296140.1 | YebW family protein | - |
| MW405_RS21555 | 4559842..4560078 | - | 237 | WP_001295499.1 | YebV family protein | - |
| MW405_RS21560 | 4560196..4561635 | - | 1440 | WP_001467894.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T242188 NZ_CP095518:4558652-4558754 [Escherichia coli]
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 269 bp
>AT242188 NZ_CP095518:c4558792-4558524 [Escherichia coli]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
