Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2075917..2076062 | Replicon | chromosome |
| Accession | NZ_CP095421 | ||
| Organism | Klebsiella pneumoniae strain IM057 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2075953..2076055 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2075917..2076062 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| MWR70_RS10255 (MWR70_10240) | 2071047..2073107 | + | 2061 | WP_004151449.1 | oligopeptidase B | - |
| MWR70_RS10260 (MWR70_10245) | 2073111..2073770 | - | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| MWR70_RS10265 (MWR70_10250) | 2073849..2074079 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| MWR70_RS10270 (MWR70_10255) | 2074192..2074566 | + | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| MWR70_RS10275 (MWR70_10260) | 2074570..2075439 | + | 870 | WP_062955019.1 | copper homeostasis membrane protein CopD | - |
| MWR70_RS10280 (MWR70_10265) | 2075456..2075794 | + | 339 | WP_002911404.1 | YebY family protein | - |
| - | 2075917..2076062 | - | 146 | - | - | Antitoxin |
| - | 2075953..2076055 | + | 103 | - | - | Toxin |
| MWR70_RS10285 (MWR70_10270) | 2076430..2076573 | - | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| MWR70_RS10290 (MWR70_10275) | 2076678..2077646 | - | 969 | WP_004151446.1 | VirK/YbjX family protein | - |
| MWR70_RS10295 (MWR70_10280) | 2077803..2078456 | + | 654 | WP_004180432.1 | protein-serine/threonine phosphatase | - |
| MWR70_RS10300 (MWR70_10285) | 2078453..2078644 | - | 192 | WP_002911395.1 | YebW family protein | - |
| MWR70_RS10305 (MWR70_10290) | 2078742..2078981 | - | 240 | WP_002911393.1 | YebV family protein | - |
| MWR70_RS10310 (MWR70_10295) | 2079097..2080530 | - | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T241924 NZ_CP095421:2075953-2076055 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT241924 NZ_CP095421:c2076062-2075917 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
