Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type VIII Classification (family/domain) SdsR-RyeA/-
Location 1905712..1905822 Replicon chromosome
Accession NZ_CP094308
Organism Edwardsiella anguillarum strain R18-14-1

Toxin (RNA)


Gene name SdsR
Locus tag -
Coordinates 1905714..1905815 (-)

Antitoxin (RNA)


Gene name RyeA
Locus tag -
Coordinates 1905712..1905822 (+)

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
MQ096_RS09025 (MQ096_09025) 1901472..1901753 - 282 WP_015871319.1 type II toxin-antitoxin system RelE/ParE family toxin -
MQ096_RS09030 (MQ096_09030) 1901743..1901994 - 252 WP_015871318.1 type II toxin-antitoxin system Phd/YefM family antitoxin -
MQ096_RS09035 (MQ096_09035) 1902282..1902773 + 492 WP_225865179.1 hypothetical protein -
MQ096_RS09040 (MQ096_09040) 1902760..1903107 + 348 WP_144242832.1 hypothetical protein -
MQ096_RS09045 (MQ096_09045) 1903479..1905353 + 1875 WP_034165826.1 PhoX family phosphatase -
- 1905712..1905822 + 111 - - Antitoxin
- 1905714..1905815 - 102 - - Toxin
MQ096_RS09050 (MQ096_09050) 1906595..1909954 + 3360 WP_081926440.1 autotransporter outer membrane beta-barrel domain-containing protein -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)
- inside Prophage - - 1868778..1917148 48370


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Sequences

Toxin        


Download         Length: 102 bp

>T239530 NZ_CP094308:c1905815-1905714 [Edwardsiella anguillarum]
GCAAGGCATTCAATGCCTGCATAATGCCAACTTTTAGCGCACGGCTCTCCATAAGAGCCATTCCCCTAGACCTGACACAG
GAATCGTGCCAGGTCTTTTTTT

Antitoxin


Download         Length: 111 bp

>AT239530 NZ_CP094308:1905712-1905822 [Edwardsiella anguillarum]
ATAAAAAAAGACCTGGCACGATTCCTGTGTCAGGTCTAGGGGAATGGCTCTTATGGAGAGCCGTGCGCTAAAAGTTGGCA
TTATGCAGGCATTGAATGCCTTGCTCTTTAA

Structures

Antitoxin

Download structure file

Antitoxin

Download structure file

References