Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1820153..1820263 | Replicon | chromosome |
| Accession | NZ_CP094301 | ||
| Organism | Edwardsiella anguillarum strain A20-09557 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1820155..1820256 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1820153..1820263 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| MQ090_RS08430 (MQ090_08420) | 1815913..1816194 | - | 282 | WP_015871319.1 | type II toxin-antitoxin system RelE/ParE family toxin | - |
| MQ090_RS08435 (MQ090_08425) | 1816184..1816435 | - | 252 | WP_015871318.1 | type II toxin-antitoxin system Phd/YefM family antitoxin | - |
| MQ090_RS08440 (MQ090_08430) | 1816723..1817214 | + | 492 | WP_283294721.1 | hypothetical protein | - |
| MQ090_RS08445 (MQ090_08435) | 1817201..1817515 | + | 315 | WP_283294722.1 | hypothetical protein | - |
| MQ090_RS08450 (MQ090_08440) | 1817920..1819794 | + | 1875 | WP_045427621.1 | PhoX family phosphatase | - |
| - | 1820153..1820263 | + | 111 | - | - | Antitoxin |
| - | 1820155..1820256 | - | 102 | - | - | Toxin |
| MQ090_RS08455 (MQ090_08445) | 1821231..1824395 | + | 3165 | WP_158409708.1 | autotransporter outer membrane beta-barrel domain-containing protein | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | - | 1780989..1826402 | 45413 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 102 bp
>T239480 NZ_CP094301:c1820256-1820155 [Edwardsiella anguillarum]
GCAAGGCATTCAATGCCTGCATAATGCCAACTTTTAGCGCACGGCTCTCCATAAGAGCCATTCCCCTAGACCTGACACAG
GAATCGTGCCAGGTCTTTTTTT
GCAAGGCATTCAATGCCTGCATAATGCCAACTTTTAGCGCACGGCTCTCCATAAGAGCCATTCCCCTAGACCTGACACAG
GAATCGTGCCAGGTCTTTTTTT
Antitoxin
Download Length: 111 bp
>AT239480 NZ_CP094301:1820153-1820263 [Edwardsiella anguillarum]
ATAAAAAAAGACCTGGCACGATTCCTGTGTCAGGTCTAGGGGAATGGCTCTTATGGAGAGCCGTGCGCTAAAAGTTGGCA
TTATGCAGGCATTGAATGCCTTGCTCTTTAA
ATAAAAAAAGACCTGGCACGATTCCTGTGTCAGGTCTAGGGGAATGGCTCTTATGGAGAGCCGTGCGCTAAAAGTTGGCA
TTATGCAGGCATTGAATGCCTTGCTCTTTAA
