Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2065296..2065442 | Replicon | chromosome |
| Accession | NZ_CP094272 | ||
| Organism | Klebsiella aerogenes strain NY1688 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2065331..2065434 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2065296..2065442 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| MQE04_RS10055 (MQE04_10055) | 2060405..2062465 | + | 2061 | WP_224146945.1 | oligopeptidase B | - |
| MQE04_RS10060 (MQE04_10060) | 2062468..2063127 | - | 660 | WP_015366006.1 | exodeoxyribonuclease X | - |
| MQE04_RS10065 (MQE04_10065) | 2063207..2063437 | - | 231 | WP_224146944.1 | DNA polymerase III subunit theta | - |
| MQE04_RS10070 (MQE04_10070) | 2063572..2063946 | + | 375 | WP_047063540.1 | CopC domain-containing protein YobA | - |
| MQE04_RS10075 (MQE04_10075) | 2063950..2064819 | + | 870 | WP_224146943.1 | copper homeostasis membrane protein CopD | - |
| MQE04_RS10080 (MQE04_10080) | 2064833..2065174 | + | 342 | WP_015705946.1 | YebY family protein | - |
| - | 2065296..2065442 | - | 147 | - | - | Antitoxin |
| - | 2065331..2065434 | + | 104 | - | - | Toxin |
| MQE04_RS10085 (MQE04_10085) | 2065562..2066515 | - | 954 | WP_026612269.1 | spore coat U domain-containing protein | - |
| MQE04_RS10090 (MQE04_10090) | 2066528..2068852 | - | 2325 | WP_048228936.1 | fimbria/pilus outer membrane usher protein | - |
| MQE04_RS10095 (MQE04_10095) | 2068855..2069604 | - | 750 | WP_015366013.1 | molecular chaperone | - |
| MQE04_RS10100 (MQE04_10100) | 2069622..2070140 | - | 519 | WP_045411482.1 | spore coat U domain-containing protein | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T239427 NZ_CP094272:2065331-2065434 [Klebsiella aerogenes]
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 147 bp
>AT239427 NZ_CP094272:c2065442-2065296 [Klebsiella aerogenes]
TAATAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAA
GTTGGCATTAATGCAGGCTAAGTCGCCTTGCCTTATAAGAATAGTTGACTGTGACAGGTTTTCCAGT
TAATAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAA
GTTGGCATTAATGCAGGCTAAGTCGCCTTGCCTTATAAGAATAGTTGACTGTGACAGGTTTTCCAGT
