Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1955402..1955547 | Replicon | chromosome |
| Accession | NZ_CP093495 | ||
| Organism | Klebsiella pneumoniae strain VA32 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1955438..1955540 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1955402..1955547 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| MO414_RS09500 (MO414_09490) | 1950532..1952592 | + | 2061 | WP_004151449.1 | oligopeptidase B | - |
| MO414_RS09505 (MO414_09495) | 1952596..1953255 | - | 660 | WP_032425085.1 | exodeoxyribonuclease X | - |
| MO414_RS09510 (MO414_09500) | 1953334..1953564 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| MO414_RS09515 (MO414_09505) | 1953677..1954051 | + | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| MO414_RS09520 (MO414_09510) | 1954055..1954924 | + | 870 | WP_004189267.1 | copper homeostasis membrane protein CopD | - |
| MO414_RS09525 (MO414_09515) | 1954941..1955279 | + | 339 | WP_016529031.1 | YebY family protein | - |
| - | 1955402..1955547 | - | 146 | - | - | Antitoxin |
| - | 1955438..1955540 | + | 103 | - | - | Toxin |
| MO414_RS09530 (MO414_09520) | 1955915..1956058 | - | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| MO414_RS09535 (MO414_09525) | 1956163..1957131 | - | 969 | WP_004151446.1 | VirK/YbjX family protein | - |
| MO414_RS09540 (MO414_09530) | 1957288..1957941 | + | 654 | WP_004180432.1 | protein-serine/threonine phosphatase | - |
| MO414_RS09545 (MO414_09535) | 1957938..1958129 | - | 192 | WP_002911395.1 | YebW family protein | - |
| MO414_RS09550 (MO414_09540) | 1958227..1958466 | - | 240 | WP_002911393.1 | YebV family protein | - |
| MO414_RS09555 (MO414_09545) | 1958582..1960015 | - | 1434 | WP_032411854.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T238778 NZ_CP093495:1955438-1955540 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT238778 NZ_CP093495:c1955547-1955402 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
