Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2202056..2202201 | Replicon | chromosome |
| Accession | NZ_CP093271 | ||
| Organism | Klebsiella oxytoca strain C-21-18 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2202091..2202194 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2202056..2202201 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| MN553_RS10425 (MN553_10425) | 2197160..2199220 | + | 2061 | WP_016808307.1 | oligopeptidase B | - |
| MN553_RS10430 (MN553_10430) | 2199227..2199886 | - | 660 | WP_004103360.1 | exodeoxyribonuclease X | - |
| MN553_RS10435 (MN553_10435) | 2199965..2200195 | - | 231 | WP_004103351.1 | DNA polymerase III subunit theta | - |
| MN553_RS10440 (MN553_10440) | 2200331..2200705 | + | 375 | WP_004103348.1 | CopC domain-containing protein YobA | - |
| MN553_RS10445 (MN553_10445) | 2200710..2201579 | + | 870 | WP_004103346.1 | copper homeostasis membrane protein CopD | - |
| MN553_RS10450 (MN553_10450) | 2201596..2201934 | + | 339 | WP_004103344.1 | YebY family protein | - |
| - | 2202056..2202201 | - | 146 | - | - | Antitoxin |
| - | 2202091..2202194 | + | 104 | - | - | Toxin |
| MN553_RS10455 (MN553_10455) | 2202321..2203280 | - | 960 | WP_004113762.1 | spore coat protein U domain-containing protein | - |
| MN553_RS10460 (MN553_10460) | 2203292..2205625 | - | 2334 | WP_049593002.1 | fimbria/pilus outer membrane usher protein | - |
| MN553_RS10465 (MN553_10465) | 2205628..2206335 | - | 708 | WP_224226407.1 | fimbria/pilus periplasmic chaperone | - |
| MN553_RS10470 (MN553_10470) | 2206410..2206928 | - | 519 | WP_023321220.1 | spore coat U domain-containing protein | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T237958 NZ_CP093271:2202091-2202194 [Klebsiella oxytoca]
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTTTTTTT
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTTTTTTT
Antitoxin
Download Length: 146 bp
>AT237958 NZ_CP093271:c2202201-2202056 [Klebsiella oxytoca]
AAAAGATAAAAAAAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCCTTATAAGAATAGTTTACCGTGTCAGGTTTTCCAGT
AAAAGATAAAAAAAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCCTTATAAGAATAGTTTACCGTGTCAGGTTTTCCAGT
