Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 843968..844136 | Replicon | chromosome |
| Accession | NZ_CP092828 | ||
| Organism | Klebsiella michiganensis strain HOBD-7 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 843975..844078 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 843968..844136 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| MJ905_RS03960 (MJ905_03955) | 839242..839760 | + | 519 | WP_004852079.1 | spore coat U domain-containing protein | - |
| MJ905_RS03965 (MJ905_03960) | 839779..840543 | + | 765 | WP_177331983.1 | molecular chaperone | - |
| MJ905_RS03970 (MJ905_03965) | 840546..842876 | + | 2331 | WP_255850595.1 | fimbria/pilus outer membrane usher protein | - |
| MJ905_RS03975 (MJ905_03970) | 842891..843850 | + | 960 | WP_025106131.1 | spore coat protein U domain-containing protein | - |
| - | 843968..844136 | + | 169 | - | - | Antitoxin |
| - | 843975..844078 | - | 104 | - | - | Toxin |
| MJ905_RS03980 (MJ905_03975) | 844235..844573 | - | 339 | WP_004103344.1 | YebY family protein | - |
| MJ905_RS03985 (MJ905_03980) | 844590..845459 | - | 870 | WP_038424672.1 | copper homeostasis membrane protein CopD | - |
| MJ905_RS03990 (MJ905_03985) | 845464..845838 | - | 375 | WP_014229838.1 | CopC domain-containing protein YobA | - |
| MJ905_RS03995 (MJ905_03990) | 845974..846204 | + | 231 | WP_004103351.1 | DNA polymerase III subunit theta | - |
| MJ905_RS04000 (MJ905_03995) | 846283..846942 | + | 660 | WP_014229839.1 | exodeoxyribonuclease X | - |
| MJ905_RS04005 (MJ905_04000) | 846949..849009 | - | 2061 | WP_014229840.1 | oligopeptidase B | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T237222 NZ_CP092828:c844078-843975 [Klebsiella michiganensis]
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 169 bp
>AT237222 NZ_CP092828:843968-844136 [Klebsiella michiganensis]
AACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCCTTATAAGAATAGTTTACCGTGTCAGGTTTTCCAGTCCGCGACAAAAGTG
GACGAATAA
AACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCCTTATAAGAATAGTTTACCGTGTCAGGTTTTCCAGTCCGCGACAAAAGTG
GACGAATAA
