Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2492280..2492362 | Replicon | chromosome |
| Accession | NZ_CP092458 | ||
| Organism | Dickeya fangzhongdai strain 643b | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2492282..2492362 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2492280..2492362 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| MJO48_RS11020 (MJO48_11020) | 2488108..2489232 | - | 1125 | WP_038918970.1 | FIST N-terminal domain-containing protein | - |
| MJO48_RS11025 (MJO48_11025) | 2489450..2489683 | - | 234 | WP_239789108.1 | hypothetical protein | - |
| MJO48_RS11030 (MJO48_11030) | 2489722..2490741 | - | 1020 | WP_239789109.1 | ParA family protein | - |
| - | 2492280..2492362 | + | 83 | - | - | Antitoxin |
| - | 2492282..2492362 | - | 81 | - | - | Toxin |
| MJO48_RS11035 (MJO48_11035) | 2492532..2492870 | - | 339 | WP_038918972.1 | YebY family protein | - |
| MJO48_RS11040 (MJO48_11040) | 2493412..2493828 | + | 417 | WP_239789175.1 | hypothetical protein | - |
| MJO48_RS11045 (MJO48_11045) | 2494172..2494420 | + | 249 | WP_038918974.1 | GlsB/YeaQ/YmgE family stress response membrane protein | - |
| MJO48_RS11050 (MJO48_11050) | 2494535..2496277 | - | 1743 | WP_239789110.1 | ABC transporter permease subunit | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 81 bp
>T236180 NZ_CP092458:c2492362-2492282 [Dickeya fangzhongdai]
AATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTAGACCGGGCACAGGAATCGTGTTCGGTCTTTTTT
T
AATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTAGACCGGGCACAGGAATCGTGTTCGGTCTTTTTT
T
Antitoxin
Download Length: 83 bp
>AT236180 NZ_CP092458:2492280-2492362 [Dickeya fangzhongdai]
ATAAAAAAAGACCGAACACGATTCCTGTGCCCGGTCTAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGC
ATT
ATAAAAAAAGACCGAACACGATTCCTGTGCCCGGTCTAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGC
ATT
