Detailed information of TA system TA023608

Bioinformatically predicted

Overview

TA module

• Type: II
• Classification (family/domain): vapBC/VapC-VapB
• Location: 1242169..1242737
• Replicon: chromosome
• Accession: NC_012207
• Organism: Mycobacterium bovis BCG str. Tokyo 172

Toxin (Protein)

• Gene name: vapC
• Uniprot ID: G0TH08
• Locus tag: JTY_RS05940
• Protein ID: WP_003405865.1
• Coordinates: 1242363..1242737 (+)
• Length: 125 a.a.

Antitoxin (Protein)

• Gene name: vapB
• Uniprot ID: G0TH07
• Locus tag: JTY_RS05935
• Protein ID: WP_003405863.1
• Coordinates: 1242169..1242366 (+)
• Length: 66 a.a.

Genomic Context

Locus tag	Coordinates	Strand	Size (bp)	Protein ID	Product	Description
JTY_RS05915	1238210..1238848	-	639	WP_011799158.1	lipid droplet-associated protein	-
JTY_RS05920	1238938..1239945	+	1008	WP_003405853.1	4-hydroxy-3-methylbut-2-enyl diphosphate reductase	-
JTY_RS05925	1239962..1240945	-	984	WP_003898731.1	hypothetical protein	-
JTY_RS05930	1241008..1242081	+	1074	WP_003405860.1	redox-regulated ATPase YchF	-
JTY_RS05935	1242169..1242366	+	198	WP_003405863.1	type II toxin-antitoxin system VapB family antitoxin	Antitoxin
JTY_RS05940	1242363..1242737	+	375	WP_003405865.1	type II toxin-antitoxin system VapC family toxin	Toxin
JTY_RS05945	1242940..1243638	+	699	WP_010950494.1	hypothetical protein	-
JTY_RS05950	1243756..1243941	+	186	WP_003901093.1	hypothetical protein	-
JTY_RS05955	1243868..1244143	-	276	WP_003405867.1	hypothetical protein	-
JTY_RS05960	1244386..1244709	+	324	WP_003405871.1	antibiotic biosynthesis monooxygenase	-
JTY_RS05965	1244724..1245434	-	711	WP_003911399.1	hypothetical protein	-
JTY_RS22480	1245456..1245665	+	210	WP_003911400.1	hypothetical protein	-
JTY_RS05975	1245617..1246324	-	708	Protein_1159	adenylate/guanylate cyclase domain-containing protein	-

Associated MGEs

MGE detail	Similar MGEs	Relative position	MGE Type	Cargo ARG	Virulence gene	Coordinates	Length (bp)

Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.

Domains

Predicted by InterproScan

Toxin

• PIN domain (2-111)

Antitoxin

• Bacterial antitoxin of type II TA system, VapB (1-42)

Sequences

Toxin

Protein

• Length: 125 a.a.
• Molecular weight: 13444.56 Da
• Isoelectric Point: 5.1881

>T23608 WP_003405865.1 NC_012207:1242363-1242737 [Mycobacterium tuberculosis variant bovis BCG str. Tokyo 172]
VILVDTSVWIEHLRAADARLVELLGDDEAGCHPLVIEELALGSIKQRDVVLDLLANLYQFPVVTHDEVLRLVGRRRLWGR
GLGAVDANLLGSVALVGGARLWTRDKRLKAACAESGVALAEEVS

Nucleotide

• Length: 375 bp

>T23608 NC_012207:1242363-1242737 [Mycobacterium tuberculosis variant bovis BCG str. Tokyo 172]
GTGATCCTGGTCGACACTTCGGTATGGATTGAGCACCTGCGCGCCGCCGACGCGCGACTCGTCGAGCTGCTGGGCGATGA
CGAGGCCGGTTGCCATCCGCTCGTCATCGAGGAGCTGGCGCTTGGCTCGATCAAGCAGCGAGACGTTGTTCTCGATCTGT
TGGCCAACCTCTACCAGTTTCCGGTGGTGACCCACGACGAAGTGTTGCGGCTTGTCGGTCGGCGGCGGTTGTGGGGTCGG
GGACTCGGTGCCGTCGATGCCAACCTTCTTGGTTCGGTGGCTCTGGTTGGCGGCGCGCGACTATGGACGCGGGACAAGCG
GTTGAAGGCGGCGTGCGCGGAAAGCGGTGTTGCGCTGGCTGAGGAAGTGTCCTGA

Antitoxin

Protein

• Length: 66 a.a.
• Molecular weight: 6973.03 Da
• Isoelectric Point: 11.7327

>AT23608 WP_003405863.1 NC_012207:1242169-1242366 [Mycobacterium tuberculosis variant bovis BCG str. Tokyo 172]
MRTTVTVDDALLAKAAELTGVKEKSTLLREGLQTLVRVESARRLAALGGTDPQATAAPRRRTSPR

Nucleotide

• Length: 198 bp

>AT23608 NC_012207:1242169-1242366 [Mycobacterium tuberculosis variant bovis BCG str. Tokyo 172]
ATGAGGACGACGGTGACCGTTGACGACGCCTTGTTAGCCAAAGCGGCCGAATTGACTGGGGTGAAAGAGAAGTCGACGCT
CCTGCGCGAGGGGTTGCAGACACTGGTCCGGGTGGAGAGCGCCCGGCGGTTGGCGGCTCTCGGCGGCACCGACCCGCAAG
CTACCGCGGCGCCGAGACGCCGGACGTCGCCCCGGTGA

Structures

Toxin

• AlphaFold DB: G0TH08

Antitoxin

• AlphaFold DB: G0TH07