Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2127792..2127935 | Replicon | chromosome |
| Accession | NZ_CP091878 | ||
| Organism | Salmonella enterica subsp. enterica serovar Tennessee strain 21-SA00318-0 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2127830..2127933 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2127792..2127935 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| L8I56_RS10395 | 2124216..2124914 | - | 699 | WP_000944282.1 | exodeoxyribonuclease X | - |
| L8I56_RS10400 | 2124938..2125594 | - | 657 | WP_000100257.1 | carbon-nitrogen hydrolase family protein | - |
| L8I56_RS10405 | 2125702..2125932 | - | 231 | WP_000856224.1 | DNA polymerase III subunit theta | - |
| L8I56_RS10410 | 2126070..2126444 | + | 375 | WP_000168393.1 | CopC domain-containing protein YobA | - |
| L8I56_RS10415 | 2126445..2127320 | + | 876 | WP_000979690.1 | copper homeostasis membrane protein CopD | - |
| L8I56_RS10420 | 2127337..2127690 | + | 354 | WP_000722368.1 | YebY family protein | - |
| - | 2127792..2127935 | - | 144 | - | - | Antitoxin |
| - | 2127830..2127933 | + | 104 | - | - | Toxin |
| L8I56_RS10425 | 2128073..2128420 | - | 348 | Protein_2044 | tyrosine-type recombinase/integrase | - |
| L8I56_RS10430 | 2128432..2128515 | + | 84 | Protein_2045 | phage tail protein | - |
| L8I56_RS10435 | 2128689..2130989 | + | 2301 | WP_024145865.1 | type III secretion system effector SspH3 | - |
| L8I56_RS10445 | 2131131..2131659 | + | 529 | Protein_2047 | transposase | - |
| L8I56_RS10450 | 2131805..2131945 | - | 141 | WP_031624598.1 | hypothetical protein | - |
| L8I56_RS10455 | 2132111..2132380 | - | 270 | WP_011233024.1 | hypothetical protein | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | flank | IS/Tn | - | - | 2131321..2131659 | 338 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T234954 NZ_CP091878:2127830-2127933 [Salmonella enterica subsp. enterica serovar Tennessee]
GGCAAGGCGATTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAAGGCGATTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 144 bp
>AT234954 NZ_CP091878:c2127935-2127792 [Salmonella enterica subsp. enterica serovar Tennessee]
ATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGC
ATTAATGCAGGCTAAATCGCCTTGCCCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTTTG
ATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGC
ATTAATGCAGGCTAAATCGCCTTGCCCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTTTG
