Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2009312..2009455 | Replicon | chromosome |
| Accession | NZ_CP091615 | ||
| Organism | Salmonella enterica strain 1653 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2009350..2009453 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2009312..2009455 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| L5511_RS09590 | 2005736..2006434 | - | 699 | WP_000944285.1 | exodeoxyribonuclease X | - |
| L5511_RS09595 | 2006458..2007114 | - | 657 | WP_000100256.1 | nitrilase-related carbon-nitrogen hydrolase | - |
| L5511_RS09600 | 2007222..2007452 | - | 231 | WP_000856224.1 | DNA polymerase III subunit theta | - |
| L5511_RS09605 | 2007590..2007964 | + | 375 | WP_000168396.1 | CopC domain-containing protein YobA | - |
| L5511_RS09610 | 2007965..2008840 | + | 876 | WP_000979699.1 | copper homeostasis membrane protein CopD | - |
| L5511_RS09615 | 2008857..2009210 | + | 354 | WP_126524015.1 | YebY family protein | - |
| - | 2009312..2009455 | - | 144 | - | - | Antitoxin |
| - | 2009350..2009453 | + | 104 | - | - | Toxin |
| L5511_RS09620 | 2009584..2010234 | - | 651 | Protein_1879 | tyrosine-type recombinase/integrase | - |
| L5511_RS09625 | 2010245..2010550 | + | 306 | WP_206519696.1 | hypothetical protein | - |
| L5511_RS09630 | 2010507..2010710 | + | 204 | Protein_1881 | phage tail protein | - |
| L5511_RS09635 | 2010882..2011037 | + | 156 | Protein_1882 | phage tail protein | - |
| L5511_RS09640 | 2011143..2011475 | + | 333 | WP_061383450.1 | DUF1353 domain-containing protein | - |
| L5511_RS09645 | 2011524..2011633 | + | 110 | Protein_1884 | tail fiber assembly protein | - |
| L5511_RS09650 | 2011724..2011909 | - | 186 | WP_012218702.1 | PagK family vesicle-borne virulence factor | - |
| L5511_RS09655 | 2012161..2012349 | - | 189 | Protein_1886 | tail fiber assembly protein | - |
| L5511_RS09660 | 2012345..2013115 | - | 771 | WP_000758583.1 | transporter substrate-binding domain-containing protein | - |
| L5511_RS09665 | 2013185..2013283 | + | 99 | Protein_1888 | DUF4113 domain-containing protein | - |
| L5511_RS09670 | 2013606..2013734 | + | 129 | Protein_1889 | helix-turn-helix domain-containing protein | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | sopE2 | 2001971..2053444 | 51473 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T234019 NZ_CP091615:2009350-2009453 [Salmonella enterica]
GGCAAGGCGATTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAAGGCGATTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 144 bp
>AT234019 NZ_CP091615:c2009455-2009312 [Salmonella enterica]
ATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGC
ATTAATGCAGGCTAAATCGCCTTGCCCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTTTG
ATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGC
ATTAATGCAGGCTAAATCGCCTTGCCCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTTTG
