Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 3216788..3216935 | Replicon | chromosome |
| Accession | NZ_CP091527 | ||
| Organism | Klebsiella sp. PCX | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 3216792..3216894 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 3216788..3216935 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| GQR96_RS15320 | 3212304..3213737 | + | 1434 | WP_017900211.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| GQR96_RS15325 | 3213854..3214093 | + | 240 | WP_002911393.1 | YebV family protein | - |
| GQR96_RS15330 | 3214191..3214382 | + | 192 | WP_002911395.1 | YebW family protein | - |
| GQR96_RS15335 | 3214379..3215032 | - | 654 | WP_004203382.1 | protein-serine/threonine phosphatase | - |
| GQR96_RS15340 | 3215189..3216157 | + | 969 | WP_065904512.1 | VirK/YbjX family protein | - |
| GQR96_RS15345 | 3216261..3216404 | + | 144 | WP_032425946.1 | Ecr family regulatory small membrane protein | - |
| - | 3216788..3216935 | + | 148 | - | - | Antitoxin |
| - | 3216792..3216894 | - | 103 | - | - | Toxin |
| GQR96_RS15350 | 3217053..3217391 | - | 339 | WP_002911404.1 | YebY family protein | - |
| GQR96_RS15355 | 3217408..3218277 | - | 870 | WP_004203385.1 | copper homeostasis membrane protein CopD | - |
| GQR96_RS15360 | 3218281..3218655 | - | 375 | WP_004203386.1 | CopC domain-containing protein YobA | - |
| GQR96_RS15365 | 3218768..3218998 | + | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| GQR96_RS15370 | 3219077..3219736 | + | 660 | WP_065904507.1 | exodeoxyribonuclease X | - |
| GQR96_RS15375 | 3219740..3221800 | - | 2061 | WP_065904503.1 | oligopeptidase B | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T233525 NZ_CP091527:c3216894-3216792 [Klebsiella sp. PCX]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 148 bp
>AT233525 NZ_CP091527:3216788-3216935 [Klebsiella sp. PCX]
AGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTG
GCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGTCTGCG
AGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTG
GCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGTCTGCG
