Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2534995..2535266 | Replicon | chromosome |
| Accession | NZ_CP091427 | ||
| Organism | Escherichia coli strain 1000C-3 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2535033..2535136 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2534995..2535266 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| L3Z43_RS12175 | 2532152..2533591 | + | 1440 | WP_001352260.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| L3Z43_RS12180 | 2533709..2533945 | + | 237 | WP_001295499.1 | YebV family protein | - |
| L3Z43_RS12185 | 2534050..2534241 | + | 192 | WP_000457842.1 | YebW family protein | - |
| L3Z43_RS12190 | 2534242..2534898 | - | 657 | WP_000812724.1 | protein-serine/threonine phosphatase | - |
| - | 2534995..2535266 | + | 272 | - | - | Antitoxin |
| - | 2535033..2535136 | - | 104 | - | - | Toxin |
| L3Z43_RS12195 | 2535294..2535635 | - | 342 | WP_000976476.1 | YebY family protein | - |
| L3Z43_RS12200 | 2535648..2536520 | - | 873 | WP_000879289.1 | copper homeostasis membrane protein CopD | - |
| L3Z43_RS12205 | 2536524..2536898 | - | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| L3Z43_RS12210 | 2537037..2537267 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| L3Z43_RS12215 | 2537369..2538025 | + | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein YobB | - |
| L3Z43_RS12220 | 2538049..2538711 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T233312 NZ_CP091427:c2535136-2535033 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT233312 NZ_CP091427:2534995-2535266 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
