Detailed information of TA system
Overview
TA module
| Type | II | Classification (family/domain) | hicAB/HicA-HicB |
| Location | 2626683..2627362 | Replicon | chromosome |
| Accession | NZ_CP091346 | ||
| Organism | Acinetobacter baumannii strain AB217-VUB | ||
Toxin (Protein)
| Gene name | hicA | Uniprot ID | S3TWT7 |
| Locus tag | L2Z30_RS12940 | Protein ID | WP_000838146.1 |
| Coordinates | 2627180..2627362 (-) | Length | 61 a.a. |
Antitoxin (Protein)
| Gene name | hicB | Uniprot ID | N9L2H6 |
| Locus tag | L2Z30_RS12935 | Protein ID | WP_000966688.1 |
| Coordinates | 2626683..2627087 (-) | Length | 135 a.a. |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| L2Z30_RS12895 (L2Z30_12895) | 2621722..2622069 | - | 348 | WP_057078074.1 | hypothetical protein | - |
| L2Z30_RS12900 (L2Z30_12900) | 2622193..2622702 | - | 510 | WP_057078075.1 | Rha family transcriptional regulator | - |
| L2Z30_RS12905 (L2Z30_12905) | 2622838..2623767 | - | 930 | WP_057078076.1 | ORF6N domain-containing protein | - |
| L2Z30_RS12910 (L2Z30_12910) | 2623917..2624183 | + | 267 | WP_000774879.1 | hypothetical protein | - |
| L2Z30_RS12915 (L2Z30_12915) | 2624226..2624717 | - | 492 | WP_000755583.1 | DUF4468 domain-containing protein | - |
| L2Z30_RS12920 (L2Z30_12920) | 2624803..2625549 | - | 747 | WP_000599537.1 | hypothetical protein | - |
| L2Z30_RS12925 (L2Z30_12925) | 2625611..2625994 | - | 384 | WP_000725052.1 | hypothetical protein | - |
| L2Z30_RS12930 (L2Z30_12930) | 2626059..2626583 | - | 525 | WP_000721574.1 | DUF4468 domain-containing protein | - |
| L2Z30_RS12935 (L2Z30_12935) | 2626683..2627087 | - | 405 | WP_000966688.1 | type II toxin-antitoxin system HicB family antitoxin | Antitoxin |
| L2Z30_RS12940 (L2Z30_12940) | 2627180..2627362 | - | 183 | WP_000838146.1 | type II toxin-antitoxin system HicA family toxin | Toxin |
| L2Z30_RS12945 (L2Z30_12945) | 2627688..2628203 | - | 516 | WP_001185585.1 | hypothetical protein | - |
| L2Z30_RS12950 (L2Z30_12950) | 2628273..2629190 | - | 918 | WP_000094278.1 | phage tail tube protein | - |
| L2Z30_RS12955 (L2Z30_12955) | 2629243..2630421 | - | 1179 | WP_000002408.1 | hypothetical protein | - |
| L2Z30_RS12960 (L2Z30_12960) | 2630421..2630774 | - | 354 | WP_000064593.1 | hypothetical protein | - |
| L2Z30_RS12965 (L2Z30_12965) | 2630843..2631241 | - | 399 | WP_009517131.1 | phage tail terminator-like protein | - |
| L2Z30_RS12970 (L2Z30_12970) | 2631243..2631611 | - | 369 | WP_002055488.1 | hypothetical protein | - |
| L2Z30_RS12975 (L2Z30_12975) | 2631583..2631987 | - | 405 | WP_000247948.1 | hypothetical protein | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | - | 2604606..2656428 | 51822 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 61 a.a. Molecular weight: 6695.84 Da Isoelectric Point: 10.5523
>T233206 WP_000838146.1 NZ_CP091346:c2627362-2627180 [Acinetobacter baumannii]
VKSLDLIKMIEADGWYEVRVSGSHHHFKHPTKKGLVTIPHPKKDLPNGTVKSILKQAGLN
VKSLDLIKMIEADGWYEVRVSGSHHHFKHPTKKGLVTIPHPKKDLPNGTVKSILKQAGLN
Download Length: 183 bp
>T233206 NZ_FO704551:c2930344-2930171 [Xenorhabdus poinarii G6]
GTGAAGCAAAGCGAGTTTAGACGGTGGCTGGAAGCTCAAGGTGTCGAAGTTTCAAACGGGACAAACCATCTGAAACTGAA
ATATCAGGGGAAACGAAGCATCATGCCAAGGCACCCCAGCCAAGAGCTAAAAGAGCCACTGAGGAAAGCAATCATTAAGC
AATTAGGATTGTGA
GTGAAGCAAAGCGAGTTTAGACGGTGGCTGGAAGCTCAAGGTGTCGAAGTTTCAAACGGGACAAACCATCTGAAACTGAA
ATATCAGGGGAAACGAAGCATCATGCCAAGGCACCCCAGCCAAGAGCTAAAAGAGCCACTGAGGAAAGCAATCATTAAGC
AATTAGGATTGTGA
Antitoxin
Download Length: 135 a.a. Molecular weight: 14647.69 Da Isoelectric Point: 4.4328
>AT233206 WP_000966688.1 NZ_CP091346:c2627087-2626683 [Acinetobacter baumannii]
MLYPIAIERGSDTEAFGVTVPDIPGCFSAGDTLEEAIENVKEAISGHLEILAEDGEEIPLASELVKFVDDPEYKGMIWAV
TEVDVSRYLGKPEKINVTLPSRLIRKIDENVGKGKRYTTRSAFLAAGAEKLLHA
MLYPIAIERGSDTEAFGVTVPDIPGCFSAGDTLEEAIENVKEAISGHLEILAEDGEEIPLASELVKFVDDPEYKGMIWAV
TEVDVSRYLGKPEKINVTLPSRLIRKIDENVGKGKRYTTRSAFLAAGAEKLLHA
Download Length: 405 bp
>AT233206 NZ_FO704551:c2930115-2929699 [Xenorhabdus poinarii G6]
ATGCGATATCCAGTCACACTAGAGCCAGTAGAAGAGGGCGGTTATTTTGTCTCGTTCCCAGATATCCCCGAAGCCTTAAC
GCAAGGGGAGACACGGGAAGAAGCGCTGGAGATGGCACTTGATGCGTTAATCACGTCATTTGAATTTTATTTCGAAGACA
ATGAGAAAATCCCGCTTCCTCGCTCCGTAGGGCGTGATGATGATTATGTCGATGTGCCTTTAAGCGTGGCCTCTAAAGTA
CTGATGCTCAATGCGTTTGTTGATTCTAAGTTAACGCAAACTGAGCTAGCCAGCCGTATGGGGGTGAAAAAGCAGGAAGT
GACACGCATCTTTGACTTACGGCATTCAACCAAGATTGATACGGTAGGTAAGGTCGCGACGGCGATCGGCCATCAATTAA
CTTTGTCTATTGAGTAA
ATGCGATATCCAGTCACACTAGAGCCAGTAGAAGAGGGCGGTTATTTTGTCTCGTTCCCAGATATCCCCGAAGCCTTAAC
GCAAGGGGAGACACGGGAAGAAGCGCTGGAGATGGCACTTGATGCGTTAATCACGTCATTTGAATTTTATTTCGAAGACA
ATGAGAAAATCCCGCTTCCTCGCTCCGTAGGGCGTGATGATGATTATGTCGATGTGCCTTTAAGCGTGGCCTCTAAAGTA
CTGATGCTCAATGCGTTTGTTGATTCTAAGTTAACGCAAACTGAGCTAGCCAGCCGTATGGGGGTGAAAAAGCAGGAAGT
GACACGCATCTTTGACTTACGGCATTCAACCAAGATTGATACGGTAGGTAAGGTCGCGACGGCGATCGGCCATCAATTAA
CTTTGTCTATTGAGTAA
Similar Proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|