Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1995230..1995374 | Replicon | chromosome |
| Accession | NC_011283 | ||
| Organism | Klebsiella pneumoniae 342 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1995266..1995368 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1995230..1995374 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| KPK_RS09270 | 1990360..1992420 | + | 2061 | WP_012541258.1 | oligopeptidase B | - |
| KPK_RS09275 | 1992424..1993083 | - | 660 | WP_012541259.1 | exodeoxyribonuclease X | - |
| KPK_RS09280 | 1993162..1993392 | - | 231 | WP_012541260.1 | DNA polymerase III subunit theta | - |
| KPK_RS09285 | 1993506..1993880 | + | 375 | WP_012541261.1 | CopC domain-containing protein YobA | - |
| KPK_RS09290 | 1993884..1994753 | + | 870 | WP_012541262.1 | copper homeostasis membrane protein CopD | - |
| KPK_RS09295 | 1994770..1995108 | + | 339 | WP_008804271.1 | YebY family protein | - |
| - | 1995230..1995374 | - | 145 | - | - | Antitoxin |
| - | 1995266..1995368 | + | 103 | - | - | Toxin |
| KPK_RS30940 | 1995753..1995896 | - | 144 | WP_048268691.1 | Ecr family regulatory small membrane protein | - |
| KPK_RS09305 | 1996000..1996989 | - | 990 | WP_032691211.1 | VirK/YbjX family protein | - |
| KPK_RS09310 | 1997125..1997778 | + | 654 | WP_008804273.1 | protein-serine/threonine phosphatase | - |
| KPK_RS09315 | 1997775..1997966 | - | 192 | WP_002911395.1 | YebW family protein | - |
| KPK_RS09320 | 1998064..1998303 | - | 240 | WP_002911393.1 | YebV family protein | - |
| KPK_RS09325 | 1998419..1999852 | - | 1434 | WP_012541265.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T23094 NC_011283:1995266-1995368 [Klebsiella variicola]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 145 bp
>AT23094 NC_011283:c1995374-1995230 [Klebsiella variicola]
ACCGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGT
TGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
ACCGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGT
TGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
