Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type VIII Classification (family/domain) SdsR-RyeA/-
Location 1262672..1262817 Replicon
Accession NC_011274
Organism Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91

Toxin (RNA)


Gene name SdsR
Locus tag -
Coordinates 1262712..1262815 (+)

Antitoxin (RNA)


Gene name RyeA
Locus tag -
Coordinates 1262672..1262817 (-)

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
- 1262672..1262817 - 146 NuclAT_1 - Antitoxin
- 1262712..1262815 + 104 NuclT_0 - Toxin

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Sequences

Toxin        


Download         Length: 104 bp

>T23076 NC_011274:1262712-1262815 [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91]
GGCAAGGCGATTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATCTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT

Antitoxin


Download         Length: 146 bp

>AT23076 NC_011274:c1262817-1262672 [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91]
ATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAGATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGC
ATTAATGCAGGCTAAATCGCCTTGCCCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTTTGCG

Structures

Antitoxin

Download structure file

Antitoxin

Download structure file

References