Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2934629..2934900 | Replicon | chromosome |
| Accession | NZ_CP090305 | ||
| Organism | Escherichia coli strain Z503 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2934759..2934862 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2934629..2934900 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LXF06_RS14050 | 2931184..2931846 | - | 663 | WP_000944258.1 | exodeoxyribonuclease X | - |
| LXF06_RS14055 | 2931870..2932526 | - | 657 | WP_001752600.1 | carbon-nitrogen hydrolase family protein YobB | - |
| LXF06_RS14060 | 2932628..2932858 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| LXF06_RS14065 | 2932997..2933371 | + | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| LXF06_RS14070 | 2933375..2934247 | + | 873 | WP_000879295.1 | copper homeostasis membrane protein CopD | - |
| LXF06_RS14075 | 2934260..2934601 | + | 342 | WP_000976472.1 | YebY family protein | - |
| - | 2934629..2934900 | - | 272 | - | - | Antitoxin |
| - | 2934759..2934862 | + | 104 | - | - | Toxin |
| LXF06_RS14080 | 2934997..2935653 | + | 657 | WP_000812732.1 | protein-serine/threonine phosphatase | - |
| LXF06_RS14085 | 2935654..2935845 | - | 192 | WP_001338167.1 | YebW family protein | - |
| LXF06_RS14090 | 2935950..2936186 | - | 237 | WP_072667348.1 | DUF1480 family protein | - |
| LXF06_RS14095 | 2936304..2937743 | - | 1440 | WP_001351758.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T230405 NZ_CP090305:2934759-2934862 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT230405 NZ_CP090305:c2934900-2934629 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
