Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2774198..2774338 | Replicon | chromosome |
| Accession | NZ_CP090028 | ||
| Organism | Serratia ureilytica strain W051 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2774198..2774294 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2774198..2774338 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LSG14_RS13140 | 2769315..2769593 | + | 279 | WP_233788143.1 | hypothetical protein | - |
| LSG14_RS13145 | 2769645..2771783 | + | 2139 | WP_233788144.1 | hypothetical protein | - |
| LSG14_RS13150 | 2771780..2772280 | + | 501 | WP_197825950.1 | siphovirus Gp157 family protein | - |
| LSG14_RS13155 | 2772322..2772498 | + | 177 | WP_168166355.1 | hypothetical protein | - |
| LSG14_RS13160 | 2772549..2772755 | + | 207 | WP_060450650.1 | hypothetical protein | - |
| LSG14_RS13165 | 2772721..2773062 | + | 342 | WP_080437611.1 | excisionase | - |
| LSG14_RS13170 | 2773037..2774119 | + | 1083 | WP_233788145.1 | phage integrase Arm DNA-binding domain-containing protein | - |
| - | 2774198..2774294 | - | 97 | - | - | Toxin |
| - | 2774198..2774338 | + | 141 | - | - | Antitoxin |
| LSG14_RS13175 | 2774436..2774777 | - | 342 | WP_016928154.1 | YebY family protein | - |
| LSG14_RS13180 | 2774847..2775728 | - | 882 | WP_164120395.1 | copper homeostasis membrane protein CopD | - |
| LSG14_RS13185 | 2775731..2776114 | - | 384 | WP_004940886.1 | CopC domain-containing protein YobA | - |
| LSG14_RS13190 | 2776441..2776959 | - | 519 | WP_033642716.1 | non-heme ferritin | - |
| LSG14_RS13195 | 2777300..2777530 | + | 231 | WP_033642715.1 | DNA polymerase III subunit theta | - |
| LSG14_RS13200 | 2777562..2778515 | - | 954 | WP_089192588.1 | prolyl aminopeptidase | - |
| LSG14_RS13205 | 2778693..2779118 | - | 426 | WP_033652008.1 | RNA polymerase-binding protein DksA | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | gtrB | 2729401..2780929 | 51528 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 97 bp
>T229928 NZ_CP090028:c2774294-2774198 [Serratia ureilytica]
AACAAGCCCTGCATTAAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTAGACCGAATATAGGAATC
GTATTCGGTCTTTTTTT
AACAAGCCCTGCATTAAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTAGACCGAATATAGGAATC
GTATTCGGTCTTTTTTT
Antitoxin
Download Length: 141 bp
>AT229928 NZ_CP090028:2774198-2774338 [Serratia ureilytica]
AAAAAAAGACCGAATACGATTCCTATATTCGGTCTAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCAT
TTAATGCAGGGCTTGTTCAGCCGTGCACTTTAAGAGTAGCCTACCGCGCCAGTTTTGCCAG
AAAAAAAGACCGAATACGATTCCTATATTCGGTCTAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCAT
TTAATGCAGGGCTTGTTCAGCCGTGCACTTTAAGAGTAGCCTACCGCGCCAGTTTTGCCAG
