Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 5151496..5151664 | Replicon | chromosome |
| Accession | NZ_CP089403 | ||
| Organism | Klebsiella pasteurii strain Kox205 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 5151503..5151606 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 5151496..5151664 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LUW96_RS24400 (LUW96_24400) | 5146770..5147288 | + | 519 | WP_004122022.1 | spore coat U domain-containing protein | - |
| LUW96_RS24405 (LUW96_24405) | 5147307..5148071 | + | 765 | WP_049114587.1 | molecular chaperone | - |
| LUW96_RS24410 (LUW96_24410) | 5148074..5150404 | + | 2331 | WP_049114586.1 | fimbria/pilus outer membrane usher protein | - |
| LUW96_RS24415 (LUW96_24415) | 5150419..5151378 | + | 960 | WP_049114593.1 | spore coat protein U domain-containing protein | - |
| - | 5151496..5151664 | + | 169 | - | - | Antitoxin |
| - | 5151503..5151606 | - | 104 | - | - | Toxin |
| LUW96_RS24420 (LUW96_24420) | 5151763..5152101 | - | 339 | WP_004122026.1 | YebY family protein | - |
| LUW96_RS24425 (LUW96_24425) | 5152118..5152987 | - | 870 | WP_004122027.1 | copper homeostasis membrane protein CopD | - |
| LUW96_RS24430 (LUW96_24430) | 5152992..5153366 | - | 375 | WP_004122028.1 | CopC domain-containing protein YobA | - |
| LUW96_RS24435 (LUW96_24435) | 5153502..5153732 | + | 231 | WP_004122029.1 | DNA polymerase III subunit theta | - |
| LUW96_RS24440 (LUW96_24440) | 5153811..5154470 | + | 660 | WP_004122030.1 | exodeoxyribonuclease X | - |
| LUW96_RS24445 (LUW96_24445) | 5154477..5156537 | - | 2061 | WP_049114584.1 | oligopeptidase B | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T228171 NZ_CP089403:c5151606-5151503 [Klebsiella pasteurii]
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 169 bp
>AT228171 NZ_CP089403:5151496-5151664 [Klebsiella pasteurii]
AATAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCCTTATAAGAATAGTTTACCGTGTCAGGTTTTCCAGTCCGTGACAAAAGTG
GACGAATAA
AATAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCCTTATAAGAATAGTTTACCGTGTCAGGTTTTCCAGTCCGTGACAAAAGTG
GACGAATAA
