Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2348061..2348332 | Replicon | chromosome |
| Accession | NZ_CP089272 | ||
| Organism | Escherichia coli O157:H7 strain M1300706001A | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2348191..2348294 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2348061..2348332 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LSI73_RS11995 | 2344616..2345278 | - | 663 | WP_000944244.1 | exodeoxyribonuclease X | - |
| LSI73_RS12000 | 2345302..2345958 | - | 657 | WP_000011656.1 | carbon-nitrogen hydrolase family protein YobB | - |
| LSI73_RS12005 | 2346060..2346290 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| LSI73_RS12010 | 2346429..2346803 | + | 375 | WP_000168751.1 | CopC domain-containing protein YobA | - |
| LSI73_RS12015 | 2346807..2347679 | + | 873 | WP_000879314.1 | copper homeostasis membrane protein CopD | - |
| LSI73_RS12020 | 2347692..2348033 | + | 342 | WP_000976483.1 | YebY family protein | - |
| - | 2348061..2348332 | - | 272 | - | - | Antitoxin |
| - | 2348191..2348294 | + | 104 | - | - | Toxin |
| LSI73_RS12025 | 2348429..2349085 | + | 657 | WP_000812736.1 | protein-serine/threonine phosphatase | - |
| LSI73_RS12030 | 2349086..2349277 | - | 192 | WP_001296140.1 | YebW family protein | - |
| LSI73_RS12035 | 2349382..2349618 | - | 237 | WP_001295499.1 | YebV family protein | - |
| LSI73_RS12040 | 2349736..2351175 | - | 1440 | WP_001302304.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T227949 NZ_CP089272:2348191-2348294 [Escherichia coli O157:H7]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT227949 NZ_CP089272:c2348332-2348061 [Escherichia coli O157:H7]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
