Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2030654..2030799 | Replicon | chromosome |
| Accession | NZ_CP089234 | ||
| Organism | Klebsiella sp. KPN54798 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2030690..2030792 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2030654..2030799 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LPQ25_RS09645 | 2025784..2027844 | + | 2061 | WP_004151449.1 | oligopeptidase B | - |
| LPQ25_RS09650 | 2027848..2028507 | - | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| LPQ25_RS09655 | 2028586..2028816 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| LPQ25_RS09660 | 2028929..2029303 | + | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| LPQ25_RS09665 | 2029307..2030176 | + | 870 | WP_014907333.1 | copper homeostasis membrane protein CopD | - |
| LPQ25_RS09670 | 2030193..2030531 | + | 339 | WP_002911404.1 | YebY family protein | - |
| - | 2030654..2030799 | - | 146 | - | - | Antitoxin |
| - | 2030690..2030792 | + | 103 | - | - | Toxin |
| LPQ25_RS09675 | 2031167..2031310 | - | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| LPQ25_RS09680 | 2031415..2032383 | - | 969 | WP_014907334.1 | VirK/YbjX family protein | - |
| LPQ25_RS09685 | 2032540..2033193 | + | 654 | WP_004180432.1 | protein-serine/threonine phosphatase | - |
| LPQ25_RS09690 | 2033190..2033381 | - | 192 | WP_002911395.1 | YebW family protein | - |
| LPQ25_RS09695 | 2033479..2033718 | - | 240 | WP_002911393.1 | YebV family protein | - |
| LPQ25_RS09700 | 2033834..2035267 | - | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T227880 NZ_CP089234:2030690-2030792 [Klebsiella sp. KPN54798]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT227880 NZ_CP089234:c2030799-2030654 [Klebsiella sp. KPN54798]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
