Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2064528..2064799 | Replicon | chromosome |
| Accession | NZ_CP089142 | ||
| Organism | Escherichia coli strain XD35 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2064658..2064761 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2064528..2064799 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| K0768_RS13315 | 2061084..2061746 | - | 663 | WP_063084778.1 | exodeoxyribonuclease X | - |
| K0768_RS13320 | 2061770..2062426 | - | 657 | WP_000011657.1 | carbon-nitrogen hydrolase family protein YobB | - |
| K0768_RS13325 | 2062528..2062758 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| K0768_RS13330 | 2062897..2063271 | + | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| K0768_RS13335 | 2063275..2064147 | + | 873 | WP_000879294.1 | copper homeostasis membrane protein CopD | - |
| K0768_RS13340 | 2064160..2064501 | + | 342 | WP_000976472.1 | YebY family protein | - |
| - | 2064528..2064799 | - | 272 | - | - | Antitoxin |
| - | 2064658..2064761 | + | 104 | - | - | Toxin |
| K0768_RS13345 | 2064896..2065552 | + | 657 | WP_000812724.1 | protein-serine/threonine phosphatase | - |
| K0768_RS13350 | 2065553..2065744 | - | 192 | WP_001296140.1 | YebW family protein | - |
| K0768_RS13355 | 2065849..2066085 | - | 237 | WP_001295499.1 | YebV family protein | - |
| K0768_RS13360 | 2066203..2067642 | - | 1440 | WP_000057022.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T227678 NZ_CP089142:2064658-2064761 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT227678 NZ_CP089142:c2064799-2064528 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTAGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTAGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
