Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2090390..2090661 | Replicon | chromosome |
| Accession | NZ_CP088131 | ||
| Organism | Escherichia coli strain 81 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2090520..2090623 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2090390..2090661 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LRM32_RS10135 | 2086945..2087607 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| LRM32_RS10140 | 2087631..2088287 | - | 657 | WP_000011657.1 | carbon-nitrogen hydrolase family protein YobB | - |
| LRM32_RS10145 | 2088389..2088619 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| LRM32_RS10150 | 2088758..2089132 | + | 375 | WP_000168738.1 | CopC domain-containing protein YobA | - |
| LRM32_RS10155 | 2089136..2090008 | + | 873 | WP_000879286.1 | copper homeostasis membrane protein CopD | - |
| LRM32_RS10160 | 2090021..2090362 | + | 342 | WP_000976472.1 | YebY family protein | - |
| - | 2090390..2090661 | - | 272 | - | - | Antitoxin |
| - | 2090520..2090623 | + | 104 | - | - | Toxin |
| LRM32_RS10165 | 2090758..2091414 | + | 657 | WP_000812739.1 | protein-serine/threonine phosphatase | - |
| LRM32_RS10170 | 2091415..2091606 | - | 192 | WP_001313035.1 | YebW family protein | - |
| LRM32_RS10175 | 2091711..2091947 | - | 237 | WP_001295499.1 | YebV family protein | - |
| LRM32_RS10180 | 2092065..2093504 | - | 1440 | WP_024176540.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T226722 NZ_CP088131:2090520-2090623 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT226722 NZ_CP088131:c2090661-2090390 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
