Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2915358..2915512 | Replicon | chromosome |
| Accession | NZ_CP088119 | ||
| Organism | Enterobacter kobei strain 6 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2915374..2915477 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2915358..2915512 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LRM31_RS13885 (LRM31_13885) | 2911636..2913078 | + | 1443 | WP_047026971.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| LRM31_RS13890 (LRM31_13890) | 2913183..2913422 | + | 240 | WP_008500472.1 | YebV family protein | - |
| LRM31_RS13895 (LRM31_13895) | 2913457..2914101 | - | 645 | WP_047026970.1 | protein-serine/threonine phosphatase | - |
| LRM31_RS13900 (LRM31_13900) | 2914269..2915210 | + | 942 | WP_047026969.1 | VirK/YbjX family protein | - |
| - | 2915358..2915512 | + | 155 | - | - | Antitoxin |
| - | 2915374..2915477 | - | 104 | - | - | Toxin |
| LRM31_RS13905 (LRM31_13905) | 2915617..2915955 | - | 339 | WP_047026968.1 | YebY family protein | - |
| LRM31_RS13910 (LRM31_13910) | 2915972..2916841 | - | 870 | WP_047026967.1 | copper homeostasis membrane protein CopD | - |
| LRM31_RS13915 (LRM31_13915) | 2916843..2917214 | - | 372 | WP_023338431.1 | CopC domain-containing protein YobA | - |
| LRM31_RS13920 (LRM31_13920) | 2917352..2917582 | + | 231 | WP_013096102.1 | DNA polymerase III subunit theta | - |
| LRM31_RS13925 (LRM31_13925) | 2917693..2918343 | + | 651 | WP_047026966.1 | carbon-nitrogen hydrolase family protein | - |
| LRM31_RS13930 (LRM31_13930) | 2918368..2919030 | + | 663 | WP_014884303.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T226659 NZ_CP088119:c2915477-2915374 [Enterobacter kobei]
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 155 bp
>AT226659 NZ_CP088119:2915358-2915512 [Enterobacter kobei]
TGTCTTTCATACAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTG
CGCTAAAAGTTGGCATTAATGCAGGCTAAGTCGCCTTGCCTTTTAAGAATAGATGACGACGCCAGGTTTTCCAGT
TGTCTTTCATACAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTG
CGCTAAAAGTTGGCATTAATGCAGGCTAAGTCGCCTTGCCTTTTAAGAATAGATGACGACGCCAGGTTTTCCAGT
