Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2001260..2001405 | Replicon | chromosome |
| Accession | NZ_CP087629 | ||
| Organism | Klebsiella pneumoniae subsp. pneumoniae strain DD02341 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2001296..2001398 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2001260..2001405 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LMH53_RS09770 (LMH53_09770) | 1996390..1998450 | + | 2061 | WP_004151449.1 | oligopeptidase B | - |
| LMH53_RS09775 (LMH53_09775) | 1998454..1999113 | - | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| LMH53_RS09780 (LMH53_09780) | 1999192..1999422 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| LMH53_RS09785 (LMH53_09785) | 1999535..1999909 | + | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| LMH53_RS09790 (LMH53_09790) | 1999913..2000782 | + | 870 | WP_062955019.1 | copper homeostasis membrane protein CopD | - |
| LMH53_RS09795 (LMH53_09795) | 2000799..2001137 | + | 339 | WP_002911404.1 | YebY family protein | - |
| - | 2001260..2001405 | - | 146 | - | - | Antitoxin |
| - | 2001296..2001398 | + | 103 | - | - | Toxin |
| LMH53_RS09800 (LMH53_09800) | 2001773..2001916 | - | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| LMH53_RS09805 (LMH53_09805) | 2002021..2002989 | - | 969 | WP_004151446.1 | VirK/YbjX family protein | - |
| LMH53_RS09810 (LMH53_09810) | 2003146..2003799 | + | 654 | WP_004180432.1 | protein-serine/threonine phosphatase | - |
| LMH53_RS09815 (LMH53_09815) | 2003796..2003987 | - | 192 | WP_002911395.1 | YebW family protein | - |
| LMH53_RS09820 (LMH53_09820) | 2004085..2004324 | - | 240 | WP_002911393.1 | YebV family protein | - |
| LMH53_RS09825 (LMH53_09825) | 2004440..2005873 | - | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T225733 NZ_CP087629:2001296-2001398 [Klebsiella pneumoniae subsp. pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT225733 NZ_CP087629:c2001405-2001260 [Klebsiella pneumoniae subsp. pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
