Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2761772..2762043 | Replicon | chromosome |
| Accession | NZ_CP087578 | ||
| Organism | Escherichia coli strain OSUCMP42NDM | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2761810..2761913 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2761772..2762043 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| KUA31_RS13575 | 2758929..2760368 | + | 1440 | WP_000057022.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| KUA31_RS13580 | 2760486..2760722 | + | 237 | WP_001295499.1 | YebV family protein | - |
| KUA31_RS13585 | 2760827..2761018 | + | 192 | WP_001296140.1 | YebW family protein | - |
| KUA31_RS13590 | 2761019..2761675 | - | 657 | WP_000812712.1 | protein-serine/threonine phosphatase | - |
| - | 2761772..2762043 | + | 272 | - | - | Antitoxin |
| - | 2761810..2761913 | - | 104 | - | - | Toxin |
| KUA31_RS13595 | 2762071..2762412 | - | 342 | WP_000976472.1 | YebY family protein | - |
| KUA31_RS13600 | 2762425..2763297 | - | 873 | WP_001569950.1 | copper homeostasis membrane protein CopD | - |
| KUA31_RS13605 | 2763301..2763675 | - | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| KUA31_RS13610 | 2763814..2764044 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| KUA31_RS13615 | 2764146..2764802 | + | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein YobB | - |
| KUA31_RS13620 | 2764826..2765488 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T225562 NZ_CP087578:c2761913-2761810 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT225562 NZ_CP087578:2761772-2762043 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAAATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAAATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
