Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2540246..2540514 | Replicon | chromosome |
| Accession | NZ_CP087294 | ||
| Organism | Escherichia coli strain APEC E956 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2540284..2540386 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2540246..2540514 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LO740_RS12485 | 2537403..2538842 | + | 1440 | WP_001317885.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| LO740_RS12490 | 2538960..2539196 | + | 237 | WP_001295499.1 | YebV family protein | - |
| LO740_RS12495 | 2539301..2539492 | + | 192 | WP_001317886.1 | YebW family protein | - |
| LO740_RS12500 | 2539493..2540149 | - | 657 | WP_000812744.1 | protein-serine/threonine phosphatase | - |
| - | 2540246..2540514 | + | 269 | - | - | Antitoxin |
| - | 2540284..2540386 | - | 103 | - | - | Toxin |
| LO740_RS12505 | 2540544..2540885 | - | 342 | WP_000976472.1 | YebY family protein | - |
| LO740_RS12510 | 2540898..2541770 | - | 873 | WP_000879316.1 | copper homeostasis membrane protein CopD | - |
| LO740_RS12515 | 2541774..2542148 | - | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| LO740_RS12520 | 2542287..2542517 | + | 231 | WP_000916759.1 | DNA polymerase III subunit theta | - |
| LO740_RS12525 | 2542619..2543275 | + | 657 | WP_000011673.1 | carbon-nitrogen hydrolase family protein YobB | - |
| LO740_RS12530 | 2543299..2543961 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T225308 NZ_CP087294:c2540386-2540284 [Escherichia coli]
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 269 bp
>AT225308 NZ_CP087294:2540246-2540514 [Escherichia coli]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
