Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2614475..2614743 | Replicon | chromosome |
| Accession | NZ_CP087287 | ||
| Organism | Escherichia coli strain APEC 16-1068 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2614513..2614615 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2614475..2614743 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LO742_RS13020 | 2611632..2613071 | + | 1440 | WP_001350670.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| LO742_RS13025 | 2613189..2613425 | + | 237 | WP_001295499.1 | YebV family protein | - |
| LO742_RS13030 | 2613530..2613721 | + | 192 | WP_001296140.1 | YebW family protein | - |
| LO742_RS13035 | 2613722..2614378 | - | 657 | WP_000812741.1 | protein-serine/threonine phosphatase | - |
| - | 2614475..2614743 | + | 269 | - | - | Antitoxin |
| - | 2614513..2614615 | - | 103 | - | - | Toxin |
| LO742_RS13040 | 2614773..2615114 | - | 342 | WP_000984819.1 | YebY family protein | - |
| LO742_RS13045 | 2615127..2615999 | - | 873 | WP_000879320.1 | copper homeostasis membrane protein CopD | - |
| LO742_RS13050 | 2616003..2616377 | - | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| LO742_RS13055 | 2616516..2616746 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| LO742_RS13060 | 2616848..2617504 | + | 657 | WP_000011664.1 | carbon-nitrogen hydrolase family protein YobB | - |
| LO742_RS13065 | 2617527..2618189 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T225227 NZ_CP087287:c2614615-2614513 [Escherichia coli]
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 269 bp
>AT225227 NZ_CP087287:2614475-2614743 [Escherichia coli]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
