Detailed information of TA system
Overview
TA module
| Type | II | Classification (family/domain) | /BrnT(toxin) |
| Location | 3205077..3205542 | Replicon | chromosome |
| Accession | NZ_CP087073 | ||
| Organism | Pseudosulfitobacter pseudonitzschiae strain MC36-14 | ||
Toxin (Protein)
| Gene name | - | Uniprot ID | - |
| Locus tag | LOE32_RS16090 | Protein ID | WP_224557762.1 |
| Coordinates | 3205279..3205542 (-) | Length | 88 a.a. |
Antitoxin (Protein)
| Gene name | - | Uniprot ID | - |
| Locus tag | LOE32_RS16085 | Protein ID | WP_224557764.1 |
| Coordinates | 3205077..3205292 (-) | Length | 72 a.a. |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LOE32_RS16050 (LOE32_16050) | 3200185..3200550 | + | 366 | WP_028957811.1 | cytochrome o ubiquinol oxidase subunit IV | - |
| LOE32_RS16055 (LOE32_16055) | 3200547..3201245 | + | 699 | WP_037931342.1 | SURF1 family protein | - |
| LOE32_RS16065 (LOE32_16065) | 3201623..3202807 | + | 1185 | WP_224557768.1 | site-specific integrase | - |
| LOE32_RS16070 (LOE32_16070) | 3202800..3203771 | + | 972 | WP_224557767.1 | hypothetical protein | - |
| LOE32_RS16075 (LOE32_16075) | 3203952..3204332 | + | 381 | WP_224557766.1 | helix-turn-helix domain-containing protein | - |
| LOE32_RS16080 (LOE32_16080) | 3204500..3204724 | + | 225 | WP_224557765.1 | hypothetical protein | - |
| LOE32_RS16085 (LOE32_16085) | 3205077..3205292 | - | 216 | WP_224557764.1 | CopG family antitoxin | Antitoxin |
| LOE32_RS16090 (LOE32_16090) | 3205279..3205542 | - | 264 | WP_224557762.1 | BrnT family toxin | Toxin |
| LOE32_RS16095 (LOE32_16095) | 3205730..3206173 | + | 444 | WP_224557760.1 | hypothetical protein | - |
| LOE32_RS16100 (LOE32_16100) | 3206266..3207375 | + | 1110 | WP_224558030.1 | IS110 family transposase | - |
| LOE32_RS16105 (LOE32_16105) | 3207601..3208089 | + | 489 | WP_229938596.1 | DEAD/DEAH box helicase family protein | - |
| LOE32_RS16110 (LOE32_16110) | 3208013..3208279 | + | 267 | WP_229938971.1 | type I restriction-modification enzyme R subunit C-terminal domain-containing protein | - |
| LOE32_RS16115 (LOE32_16115) | 3208276..3209610 | + | 1335 | WP_229944615.1 | restriction endonuclease subunit S | - |
| LOE32_RS16120 (LOE32_16120) | 3209585..3210457 | + | 873 | WP_229944613.1 | HNH endonuclease family protein | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Genomic island | - | - | 3202977..3212888 | 9911 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 88 a.a. Molecular weight: 10254.52 Da Isoelectric Point: 5.6550
>T224697 WP_224557762.1 NZ_CP087073:c3205542-3205279 [Pseudosulfitobacter pseudonitzschiae]
MKFEYDPDKSAGNKAKHGIDFDEAQALWEDPWLLEAPARTDDEPRFFAIGMIKERHWSAVCTYRGDIIRIISVRRARKQE
IEHYEST
MKFEYDPDKSAGNKAKHGIDFDEAQALWEDPWLLEAPARTDDEPRFFAIGMIKERHWSAVCTYRGDIIRIISVRRARKQE
IEHYEST
Download Length: 264 bp
>T224697 NZ_CP120396:c646753-646376 [Salmonella enterica subsp. enterica serovar Typhi]
ATGAAAACATTACCTGTATTACCCGAGCAAGCGGCCAGTTCACGCCCGTCTCCGGTTGAAATCTGGCAGACACTGCTCAC
CCGACTGCTGGATCAGCACTACGGCCTTACGCTGAATGACACACCGTTCGCTGATGAACGTGTGATTGAGCAGCATATTG
AGGCAGGCATTTCACTGTGTGATGCGGTGAACTTTCTCGTTGAAAAATACGCACTGGTACGTACCGACCAGCCGGGATTC
AGCGCCTGTACCCGTTCTCAGTTAATAAACAGTATTGATATCCTCCGGGCCCGCCGGGCAACCGGCCTGATGGCCCGCGA
CAATTACAGAACGGTAAATAACATTACCCTGGGTAAACATCCGGGGGCGAAACAATGA
ATGAAAACATTACCTGTATTACCCGAGCAAGCGGCCAGTTCACGCCCGTCTCCGGTTGAAATCTGGCAGACACTGCTCAC
CCGACTGCTGGATCAGCACTACGGCCTTACGCTGAATGACACACCGTTCGCTGATGAACGTGTGATTGAGCAGCATATTG
AGGCAGGCATTTCACTGTGTGATGCGGTGAACTTTCTCGTTGAAAAATACGCACTGGTACGTACCGACCAGCCGGGATTC
AGCGCCTGTACCCGTTCTCAGTTAATAAACAGTATTGATATCCTCCGGGCCCGCCGGGCAACCGGCCTGATGGCCCGCGA
CAATTACAGAACGGTAAATAACATTACCCTGGGTAAACATCCGGGGGCGAAACAATGA
Antitoxin
Download Length: 72 a.a. Molecular weight: 8265.40 Da Isoelectric Point: 10.6538
>AT224697 WP_224557764.1 NZ_CP087073:c3205292-3205077 [Pseudosulfitobacter pseudonitzschiae]
MKAREFDQKFDTGENVSDLVDWSKARRTNTQTKRVNVDFPSWVVSGLDQKAKQLGVTRQSLIKLWIAERLQ
MKAREFDQKFDTGENVSDLVDWSKARRTNTQTKRVNVDFPSWVVSGLDQKAKQLGVTRQSLIKLWIAERLQ
Download Length: 216 bp
>AT224697 NZ_CP120396:c647211-646843 [Salmonella enterica subsp. enterica serovar Typhi]
GTGTCAGACACATTCTCCGGGACAACGCATCCCGATGACAATCACGACCGCCCCTGGTGGGGGCTGCCCTGTACCGTGAC
ACCCTGTTTTGGCGCCCGTCTGGTGCAGGAGGGTAACCGGTTGCATTACCTTGCCGACCGCGCCGGTATCAGAGGGCGGT
TCAGCGACGCGGATGCGTACCACCTGGACCAGGCCTTTCCGCTGCTGATGAAACAACTGGAACTCATGCTCACCAGCGGT
GAACTGAATCCCCGCCATCAGCATACCGTCACGCTGTATGCAAAAGGGCTGACCTGCGAAGCCGACACCCTCGGCAGTTG
TGGCTACGTTTATATGGCTGTTTATCCGACGCCCGAAACGAAAAAGTAA
GTGTCAGACACATTCTCCGGGACAACGCATCCCGATGACAATCACGACCGCCCCTGGTGGGGGCTGCCCTGTACCGTGAC
ACCCTGTTTTGGCGCCCGTCTGGTGCAGGAGGGTAACCGGTTGCATTACCTTGCCGACCGCGCCGGTATCAGAGGGCGGT
TCAGCGACGCGGATGCGTACCACCTGGACCAGGCCTTTCCGCTGCTGATGAAACAACTGGAACTCATGCTCACCAGCGGT
GAACTGAATCCCCGCCATCAGCATACCGTCACGCTGTATGCAAAAGGGCTGACCTGCGAAGCCGACACCCTCGGCAGTTG
TGGCTACGTTTATATGGCTGTTTATCCGACGCCCGAAACGAAAAAGTAA
Similar Proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|
Structures
Toxin
| Source | ID | Structure |
|---|
Antitoxin
| Source | ID | Structure |
|---|