Detailed information of TA system
Overview
TA module
| Type | II | Classification (family/domain) | hicAB/- |
| Location | 1332515..1333095 | Replicon | chromosome |
| Accession | NZ_CP086775 | ||
| Organism | Pseudosulfitobacter pseudonitzschiae strain TT37-69 | ||
Toxin (Protein)
| Gene name | hicA | Uniprot ID | - |
| Locus tag | LOE40_RS06985 | Protein ID | WP_224556587.1 |
| Coordinates | 1332841..1333095 (-) | Length | 85 a.a. |
Antitoxin (Protein)
| Gene name | hicB | Uniprot ID | - |
| Locus tag | LOE40_RS06980 | Protein ID | WP_224556600.1 |
| Coordinates | 1332515..1332844 (-) | Length | 110 a.a. |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LOE40_RS06930 (LOE40_06925) | 1327520..1327738 | - | 219 | WP_224556657.1 | hypothetical protein | - |
| LOE40_RS06935 (LOE40_06930) | 1327735..1327974 | - | 240 | WP_224556656.1 | hypothetical protein | - |
| LOE40_RS06940 (LOE40_06935) | 1327989..1328588 | - | 600 | WP_224556655.1 | hypothetical protein | - |
| LOE40_RS06945 (LOE40_06940) | 1328779..1329348 | + | 570 | WP_224556654.1 | hypothetical protein | - |
| LOE40_RS06950 (LOE40_06945) | 1329445..1329807 | - | 363 | WP_224556648.1 | type II toxin-antitoxin system HicB family antitoxin | - |
| LOE40_RS06955 (LOE40_06950) | 1330066..1330701 | - | 636 | WP_224556647.1 | S24 family peptidase | - |
| LOE40_RS06960 (LOE40_06955) | 1330794..1330988 | + | 195 | WP_229941852.1 | hypothetical protein | - |
| LOE40_RS06965 (LOE40_06960) | 1331212..1331736 | + | 525 | WP_224556606.1 | hypothetical protein | - |
| LOE40_RS06970 (LOE40_06965) | 1331799..1332089 | + | 291 | WP_224556604.1 | hypothetical protein | - |
| LOE40_RS22810 | 1332082..1332204 | + | 123 | WP_263481010.1 | hypothetical protein | - |
| LOE40_RS06975 (LOE40_06970) | 1332191..1332454 | - | 264 | WP_224556602.1 | hypothetical protein | - |
| LOE40_RS06980 (LOE40_06975) | 1332515..1332844 | - | 330 | WP_224556600.1 | type II toxin-antitoxin system HicB family antitoxin | Antitoxin |
| LOE40_RS06985 (LOE40_06980) | 1332841..1333095 | - | 255 | WP_224556587.1 | type II toxin-antitoxin system HicA family toxin | Toxin |
| LOE40_RS06990 (LOE40_06985) | 1333207..1333395 | - | 189 | WP_224556585.1 | ribbon-helix-helix domain-containing protein | - |
| LOE40_RS06995 (LOE40_06990) | 1333495..1333665 | + | 171 | WP_224556583.1 | hypothetical protein | - |
| LOE40_RS07000 (LOE40_06995) | 1333741..1334193 | + | 453 | WP_224556581.1 | hypothetical protein | - |
| LOE40_RS07005 (LOE40_07000) | 1334193..1334354 | + | 162 | WP_224556578.1 | hypothetical protein | - |
| LOE40_RS07010 (LOE40_07005) | 1334351..1335178 | + | 828 | WP_224556575.1 | ParB N-terminal domain-containing protein | - |
| LOE40_RS07015 (LOE40_07010) | 1335156..1335671 | + | 516 | WP_224556573.1 | hypothetical protein | - |
| LOE40_RS07020 (LOE40_07015) | 1335749..1336072 | - | 324 | WP_224556571.1 | hypothetical protein | - |
| LOE40_RS07025 (LOE40_07020) | 1336187..1338016 | + | 1830 | WP_230039982.1 | hypothetical protein | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Genomic island | - | - | 1321703..1347880 | 26177 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 85 a.a. Molecular weight: 9336.69 Da Isoelectric Point: 10.8025
>T224457 WP_224556587.1 NZ_CP086775:c1333095-1332841 [Pseudosulfitobacter pseudonitzschiae]
MNSKQRKTLKAIFTDPVSGTIEWVRIESLLVAAGAETIEGNGSRVRFVKDGVVGSFHRPHPDKEAKRYQVRDARAFLTQI
GVTP
MNSKQRKTLKAIFTDPVSGTIEWVRIESLLVAAGAETIEGNGSRVRFVKDGVVGSFHRPHPDKEAKRYQVRDARAFLTQI
GVTP
Download Length: 255 bp
>T224457 NZ_CP120331:3522076-3522294 [Salmonella enterica subsp. enterica serovar Muenchen]
ATGTCTGATAAACCATTAACTAAAACTGATTATTTGATGCGTTTACGGCGCTGTCAGACAATTGACACTCTGGAGCGCGT
CATTGAGAAAAATAAATATGAATTGTCCGACAATGAGCTGGCTGTATTTTACTCAGCTGCGGATCACCGTCTTGCAGAAT
TGACGATGAACAAACTCTACGACAAGATCCCCTCTTCAGTATGGAAATTCATTCGTTAA
ATGTCTGATAAACCATTAACTAAAACTGATTATTTGATGCGTTTACGGCGCTGTCAGACAATTGACACTCTGGAGCGCGT
CATTGAGAAAAATAAATATGAATTGTCCGACAATGAGCTGGCTGTATTTTACTCAGCTGCGGATCACCGTCTTGCAGAAT
TGACGATGAACAAACTCTACGACAAGATCCCCTCTTCAGTATGGAAATTCATTCGTTAA
Antitoxin
Download Length: 110 a.a. Molecular weight: 12090.66 Da Isoelectric Point: 6.0876
>AT224457 WP_224556600.1 NZ_CP086775:c1332844-1332515 [Pseudosulfitobacter pseudonitzschiae]
MSTMTFKGYQARVEFDPEDEIFFGRIAGINDVVGFHGESVAELKSAFHEAVDDYLETCKAAGKKPQKPYSGKVMFRVAPE
THRRIAVAAELSGKSLNQWAEEKLEAAAH
MSTMTFKGYQARVEFDPEDEIFFGRIAGINDVVGFHGESVAELKSAFHEAVDDYLETCKAAGKKPQKPYSGKVMFRVAPE
THRRIAVAAELSGKSLNQWAEEKLEAAAH
Download Length: 330 bp
>AT224457 NZ_CP120331:3521674-3522048 [Salmonella enterica subsp. enterica serovar Muenchen]
ATGGACGAATACTCACCCAAAAGACATGATATAGCACAGCTTAAATTTCTTTGCGAAACCCTGTATCATGACTGTCTTGC
AAACCTTGAAGAAAGCAACCATGGCTGGGTTAATGACCCGACCTCAGCAGTCAACCTGCAGCTCAATGAGCTGATAGAGC
ATATTGCAACTTTCGCGCTTAATTATAAAATTAAGTACAATGAAGACAATAAATTGATTGCGCAGATAGATGAATACCTG
GACGACACCTTTATGTTGTTCAGCAGCTATGGTATTAATACGCAGGATTTGCAAAAATGGCGTAAATCGGGCAACCGCCT
GTTCCGTTGTTTCGTCAACGCCACCAGGGCTAATCCTGTTAGTTTGTCTTGTTAA
ATGGACGAATACTCACCCAAAAGACATGATATAGCACAGCTTAAATTTCTTTGCGAAACCCTGTATCATGACTGTCTTGC
AAACCTTGAAGAAAGCAACCATGGCTGGGTTAATGACCCGACCTCAGCAGTCAACCTGCAGCTCAATGAGCTGATAGAGC
ATATTGCAACTTTCGCGCTTAATTATAAAATTAAGTACAATGAAGACAATAAATTGATTGCGCAGATAGATGAATACCTG
GACGACACCTTTATGTTGTTCAGCAGCTATGGTATTAATACGCAGGATTTGCAAAAATGGCGTAAATCGGGCAACCGCCT
GTTCCGTTGTTTCGTCAACGCCACCAGGGCTAATCCTGTTAGTTTGTCTTGTTAA
Similar Proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|
Structures
Toxin
| Source | ID | Structure |
|---|
Antitoxin
| Source | ID | Structure |
|---|