Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2319356..2319627 | Replicon | chromosome |
| Accession | NZ_CP086616 | ||
| Organism | Escherichia coli strain RIVM_C039629 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2319486..2319589 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2319356..2319627 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LN353_RS11160 | 2315911..2316573 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| LN353_RS11165 | 2316597..2317253 | - | 657 | WP_000011653.1 | carbon-nitrogen hydrolase family protein YobB | - |
| LN353_RS11170 | 2317355..2317585 | - | 231 | WP_000916760.1 | DNA polymerase III subunit theta | - |
| LN353_RS11175 | 2317724..2318098 | + | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| LN353_RS11180 | 2318102..2318974 | + | 873 | WP_001551232.1 | copper homeostasis membrane protein CopD | - |
| LN353_RS11185 | 2318987..2319328 | + | 342 | WP_000976472.1 | YebY family protein | - |
| - | 2319356..2319627 | - | 272 | - | - | Antitoxin |
| - | 2319486..2319589 | + | 104 | - | - | Toxin |
| LN353_RS11190 | 2319724..2320380 | + | 657 | WP_001551231.1 | protein-serine/threonine phosphatase | - |
| LN353_RS11195 | 2320381..2320572 | - | 192 | WP_001296140.1 | YebW family protein | - |
| LN353_RS11200 | 2320677..2320913 | - | 237 | WP_001295499.1 | YebV family protein | - |
| LN353_RS11205 | 2321031..2322470 | - | 1440 | WP_024186439.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | - | 2310183..2335467 | 25284 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T224029 NZ_CP086616:2319486-2319589 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT224029 NZ_CP086616:c2319627-2319356 [Escherichia coli]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGCCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGCCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
