Detailed information of TA system
Overview
TA module
| Type | IV | Classification (family/domain) | yeeUV (cbtA-cbeA)/CbtA-CbeA |
| Location | 2305587..2306388 | Replicon | chromosome |
| Accession | NZ_CP086604 | ||
| Organism | Escherichia fergusonii strain EF20JDJ4045 | ||
Toxin (Protein)
| Gene name | yeeV | Uniprot ID | D8EBK0 |
| Locus tag | LNN29_RS11300 | Protein ID | WP_001094436.1 |
| Coordinates | 2306011..2306388 (+) | Length | 126 a.a. |
Antitoxin (Protein)
| Gene name | yeeU | Uniprot ID | B7MN76 |
| Locus tag | LNN29_RS11295 | Protein ID | WP_015953067.1 |
| Coordinates | 2305587..2305964 (+) | Length | 126 a.a. |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LNN29_RS11260 (2301499) | 2301499..2302179 | + | 681 | WP_001282927.1 | WYL domain-containing protein | - |
| LNN29_RS11265 (2302327) | 2302327..2303004 | + | 678 | WP_001097312.1 | hypothetical protein | - |
| LNN29_RS11270 (2303010) | 2303010..2303243 | + | 234 | WP_001278287.1 | DUF905 family protein | - |
| LNN29_RS11275 (2303333) | 2303333..2304151 | + | 819 | WP_001175142.1 | DUF932 domain-containing protein | - |
| LNN29_RS11280 (2304242) | 2304242..2304727 | + | 486 | WP_000860054.1 | antirestriction protein | - |
| LNN29_RS11285 (2304742) | 2304742..2305218 | + | 477 | WP_001186756.1 | RadC family protein | - |
| LNN29_RS11290 (2305287) | 2305287..2305508 | + | 222 | WP_000692312.1 | DUF987 domain-containing protein | - |
| LNN29_RS11295 (2305587) | 2305587..2305964 | + | 378 | WP_015953067.1 | type IV toxin-antitoxin system cytoskeleton bundling-enhancing antitoxin CbeA | Antitoxin |
| LNN29_RS11300 (2306011) | 2306011..2306388 | + | 378 | WP_001094436.1 | TA system toxin CbtA family protein | Toxin |
| LNN29_RS11305 (2306385) | 2306385..2306873 | + | 489 | WP_000761714.1 | DUF5983 family protein | - |
| LNN29_RS11310 (2306885) | 2306885..2307082 | + | 198 | WP_000839254.1 | DUF957 domain-containing protein | - |
| LNN29_RS11315 (2307167) | 2307167..2308012 | + | 846 | WP_001280513.1 | DUF4942 domain-containing protein | - |
| LNN29_RS11320 (2308083) | 2308083..2309618 | + | 1536 | WP_000492897.1 | EAL domain-containing protein | - |
| LNN29_RS11325 (2310042) | 2310042..2310152 | + | 111 | WP_229321778.1 | Arm DNA-binding domain-containing protein | - |
| LNN29_RS11330 (2310247) | 2310247..2310327 | - | 81 | Protein_2221 | GNAT family N-acetyltransferase | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 126 a.a. Molecular weight: 13958.84 Da Isoelectric Point: 6.8603
>T223989 WP_001094436.1 NZ_CP086604:2306011-2306388 [Escherichia fergusonii]
MNTLPDTHVREASGCPSPVTIWQTLLTRLLDQHYGLTLNDTPFADERVIEQHIEAGISLCDAVNFLVEKYALVRTDQPGF
SAGAPSQLINSIDILRARRATGLMTRNNYRMVNNITQGKHPEAKQ
MNTLPDTHVREASGCPSPVTIWQTLLTRLLDQHYGLTLNDTPFADERVIEQHIEAGISLCDAVNFLVEKYALVRTDQPGF
SAGAPSQLINSIDILRARRATGLMTRNNYRMVNNITQGKHPEAKQ
Download Length: 378 bp
>T223989 NZ_CP119531:c4663293-4662979 [Raoultella electrica]
ATGCAATTCACCGTATATGCGAATACTGGTAAAAGCACCGTTTACCCTCTGCTGCTCGATGTCACCAACGATATTATTGG
ACAACTGAACCGCCGGATAGTGATCCCGCTGCTGCCGGTTGACAGGTATCCGGCAGGCCACCGCCCGGATCGCCTTGTTC
CCTTCGTCAGTCTGACAGACGGCAGAGAATACGCGGTAATGACCCACGAGCTGGCAAGTATCCCGGTTCAGGCGCTGGGG
GCGGTGTTCTGCGATGCTGCGCAGTACCGTCCGCAGGTAAAGGCTGCAATTGATTTTCTCATTGACGGCATTTAG
ATGCAATTCACCGTATATGCGAATACTGGTAAAAGCACCGTTTACCCTCTGCTGCTCGATGTCACCAACGATATTATTGG
ACAACTGAACCGCCGGATAGTGATCCCGCTGCTGCCGGTTGACAGGTATCCGGCAGGCCACCGCCCGGATCGCCTTGTTC
CCTTCGTCAGTCTGACAGACGGCAGAGAATACGCGGTAATGACCCACGAGCTGGCAAGTATCCCGGTTCAGGCGCTGGGG
GCGGTGTTCTGCGATGCTGCGCAGTACCGTCCGCAGGTAAAGGCTGCAATTGATTTTCTCATTGACGGCATTTAG
Antitoxin
Download Length: 126 a.a. Molecular weight: 13766.60 Da Isoelectric Point: 6.2021
>AT223989 WP_015953067.1 NZ_CP086604:2305587-2305964 [Escherichia fergusonii]
VSDTLPGTTHPDDNHDRPWWGLPCTVTPCFGARLVQEGNRLHYLADRAGIRGRFSDADAYHLDQAFPLLMKQLELMLTSG
ELNPRHQHTITLYAKGLTCEADTLGSCGYVYLAVYPTPAAPAITV
VSDTLPGTTHPDDNHDRPWWGLPCTVTPCFGARLVQEGNRLHYLADRAGIRGRFSDADAYHLDQAFPLLMKQLELMLTSG
ELNPRHQHTITLYAKGLTCEADTLGSCGYVYLAVYPTPAAPAITV
Download Length: 378 bp
>AT223989 NZ_CP119531:c4663532-4663296 [Raoultella electrica]
ATGGCAGCGAAACAACGCAGCACACAGAGCGTGACCATGACGGTGGAACGCGCCTTACTGGCCCGGGCGCGTGAGGCAGG
CATTAACCTGAGTGCGACCCTGACAGCCGCGTTAGATGCCGAGCTTCGGCACCATGAAGCGAAAAAATGGCAGGAAGAGA
ACAGGGAAGCCATTGAAGCACTAAATCGTTTCCATGATGAGCATGGCTGTTTCAGCGATGAATACAGGACATTTTAA
ATGGCAGCGAAACAACGCAGCACACAGAGCGTGACCATGACGGTGGAACGCGCCTTACTGGCCCGGGCGCGTGAGGCAGG
CATTAACCTGAGTGCGACCCTGACAGCCGCGTTAGATGCCGAGCTTCGGCACCATGAAGCGAAAAAATGGCAGGAAGAGA
ACAGGGAAGCCATTGAAGCACTAAATCGTTTCCATGATGAGCATGGCTGTTTCAGCGATGAATACAGGACATTTTAA
Similar Proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|
Structures
Toxin
| Source | ID | Structure |
|---|---|---|
| AlphaFold DB | A0A0E2L1N0 |
Antitoxin
| Source | ID | Structure |
|---|---|---|
| AlphaFold DB | A0A5Z3CIS0 |