Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2025115..2025386 | Replicon | chromosome |
| Accession | NZ_CP086538 | ||
| Organism | Escherichia coli strain Ec-042-T5-MAC | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2025245..2025348 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2025115..2025386 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LNN52_RS09755 | 2021670..2022332 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| LNN52_RS09760 | 2022356..2023012 | - | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein YobB | - |
| LNN52_RS09765 | 2023114..2023344 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| LNN52_RS09770 | 2023483..2023857 | + | 375 | WP_000204699.1 | CopC domain-containing protein YobA | - |
| LNN52_RS09775 | 2023861..2024733 | + | 873 | WP_000879280.1 | copper homeostasis membrane protein CopD | - |
| LNN52_RS09780 | 2024746..2025087 | + | 342 | WP_000976492.1 | YebY family protein | - |
| - | 2025115..2025386 | - | 272 | - | - | Antitoxin |
| - | 2025245..2025348 | + | 104 | - | - | Toxin |
| LNN52_RS09785 | 2025483..2026139 | + | 657 | WP_000812724.1 | protein-serine/threonine phosphatase | - |
| LNN52_RS09790 | 2026140..2026331 | - | 192 | WP_001296140.1 | YebW family protein | - |
| LNN52_RS09795 | 2026436..2026672 | - | 237 | WP_001295499.1 | YebV family protein | - |
| LNN52_RS09800 | 2026790..2028229 | - | 1440 | WP_000057023.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T223748 NZ_CP086538:2025245-2025348 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT223748 NZ_CP086538:c2025386-2025115 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
