Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2929839..2930110 | Replicon | chromosome |
| Accession | NZ_CP086259 | ||
| Organism | Escherichia coli strain SCPM-O-B-9427 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2929877..2929980 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2929839..2930110 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LMH79_RS14365 | 2926996..2928435 | + | 1440 | WP_000057022.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| LMH79_RS14370 | 2928553..2928789 | + | 237 | WP_001295499.1 | YebV family protein | - |
| LMH79_RS14375 | 2928894..2929085 | + | 192 | WP_001296140.1 | YebW family protein | - |
| LMH79_RS14380 | 2929086..2929742 | - | 657 | WP_000812712.1 | protein-serine/threonine phosphatase | - |
| - | 2929839..2930110 | + | 272 | - | - | Antitoxin |
| - | 2929877..2929980 | - | 104 | - | - | Toxin |
| LMH79_RS14385 | 2930138..2930479 | - | 342 | WP_000976472.1 | YebY family protein | - |
| LMH79_RS14390 | 2930492..2931364 | - | 873 | WP_000879280.1 | copper homeostasis membrane protein CopD | - |
| LMH79_RS14395 | 2931368..2931742 | - | 375 | WP_000204699.1 | CopC domain-containing protein YobA | - |
| LMH79_RS14400 | 2931881..2932111 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| LMH79_RS14405 | 2932213..2932869 | + | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein YobB | - |
| LMH79_RS14410 | 2932893..2933555 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T222860 NZ_CP086259:c2929980-2929877 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT222860 NZ_CP086259:2929839-2930110 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
