Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1857149..1857294 | Replicon | chromosome |
| Accession | NZ_CP086128 | ||
| Organism | Klebsiella pneumoniae strain MIN-109 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1857185..1857287 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1857149..1857294 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LLZ91_RS09015 (LLZ91_09035) | 1852279..1854339 | + | 2061 | WP_004148850.1 | oligopeptidase B | - |
| LLZ91_RS09020 (LLZ91_09040) | 1854343..1855002 | - | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| LLZ91_RS09025 (LLZ91_09045) | 1855081..1855311 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| LLZ91_RS09030 (LLZ91_09050) | 1855424..1855798 | + | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| LLZ91_RS09035 (LLZ91_09055) | 1855802..1856671 | + | 870 | WP_020956678.1 | copper homeostasis membrane protein CopD | - |
| LLZ91_RS09040 (LLZ91_09060) | 1856688..1857026 | + | 339 | WP_002911404.1 | YebY family protein | - |
| - | 1857149..1857294 | - | 146 | - | - | Antitoxin |
| - | 1857185..1857287 | + | 103 | - | - | Toxin |
| LLZ91_RS09045 (LLZ91_09065) | 1857663..1857806 | - | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| LLZ91_RS09050 (LLZ91_09070) | 1857911..1858879 | - | 969 | WP_004151446.1 | VirK/YbjX family protein | - |
| LLZ91_RS09055 (LLZ91_09075) | 1859036..1859689 | + | 654 | WP_024622748.1 | protein-serine/threonine phosphatase | - |
| LLZ91_RS09060 (LLZ91_09080) | 1859686..1859877 | - | 192 | WP_002911395.1 | YebW family protein | - |
| LLZ91_RS09065 (LLZ91_09085) | 1859975..1860214 | - | 240 | WP_002911393.1 | YebV family protein | - |
| LLZ91_RS09070 (LLZ91_09090) | 1860330..1861763 | - | 1434 | WP_021440382.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T222584 NZ_CP086128:1857185-1857287 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT222584 NZ_CP086128:c1857294-1857149 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
